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  5. GRMZM2G070259

GRMZM2G070259


Description : phragmoplastin interacting protein 1


Gene families : OG_42_0005060 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005060_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G070259
Cluster HCCA clusters: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
Bradi2g37420 No alias phragmoplastin interacting protein 1 0.02 Orthogroups_2024-Update
Cre10.g466450 No alias chloroplast RNA-binding protein 29 0.01 Orthogroups_2024-Update
Kfl00034_0350 kfl00034_0350_v1.1 (at3g55340 : 157.0) Plant-specific protein. Interacts... 0.02 Orthogroups_2024-Update
evm.model.contig_433.9 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0031226 intrinsic component of plasma membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
CC GO:0046658 anchored component of plasma membrane IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 83 148
IPR000504 RRM_dom 181 248
No external refs found!