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  5. At1g21410

At1g21410


Description : F-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]


Gene families : OG_42_0003739 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003739_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g21410
Cluster HCCA clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
133097 No alias F-box/RNI-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.G03488.1 No alias substrate adaptor *(SKP2) of SCF E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
GRMZM2G138176 No alias F-box/RNI-like superfamily protein 0.03 Orthogroups_2024-Update
PSME_00033167-RA No alias (at1g21410 : 387.0) AtSKP2;1 is a homolog of human SKP2,... 0.02 Orthogroups_2024-Update
Seita.3G236100.1 No alias substrate adaptor *(SKP2) of SCF E3 ubiquitin ligase complex 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 194 218
IPR001611 Leu-rich_rpt 221 244
IPR001810 F-box_dom 28 62
No external refs found!