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  5. GRMZM2G078379

GRMZM2G078379


Description : nucleic acid binding;zinc ion binding;DNA binding


Gene families : OG_42_0000694 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000694_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G078379
Cluster HCCA clusters: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
A4A49_06876 No alias uncharacterized protein 0.03 Orthogroups_2024-Update
A4A49_18553 No alias zinc finger ccch domain-containing protein 19 0.02 Orthogroups_2024-Update
A4A49_34864 No alias zinc finger ccch domain-containing protein 19 0.03 Orthogroups_2024-Update
At3g51120 No alias DNA binding;zinc ion binding;nucleic acid... 0.03 Orthogroups_2024-Update
Bradi4g35977 No alias nucleic acid binding;zinc ion binding;DNA binding 0.04 Orthogroups_2024-Update
Glyma.06G008300 No alias nucleic acid binding;zinc ion binding;DNA binding 0.03 Orthogroups_2024-Update
Glyma.11G074600 No alias DNA binding;zinc ion binding;nucleic acid... 0.02 Orthogroups_2024-Update
HORVU3Hr1G090910.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G081290.3 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
Pp1s258_72V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.5G315200.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
Seita.9G570500.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.04 Orthogroups_2024-Update
Sobic.001G196500.2 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
Sobic.001G534700.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
Sobic.003G293200.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.04 Orthogroups_2024-Update
Sobic.009G142000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc01g086940 No alias No description available 0.02 Orthogroups_2024-Update
Sopen11g024210 No alias Plus-3 domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
BP GO:0032958 inositol phosphate biosynthetic process IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
BP GO:0043647 inositol phosphate metabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 176 248
IPR004343 Plus-3_dom 313 417
IPR003169 GYF 595 633
No external refs found!