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  5. GRMZM2G079143

GRMZM2G079143


Description : Function unknown


Gene families : OG_42_0005489 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005489_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G079143
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
417184 No alias Function unknown 0.05 Orthogroups_2024-Update
At5g41190 No alias RNA-binding NOB1-like protein... 0.06 Orthogroups_2024-Update
Bradi3g01370 No alias Function unknown 0.04 Orthogroups_2024-Update
Brara.D01131.1 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 Orthogroups_2024-Update
Cre01.g031750 No alias Function unknown 0.02 Orthogroups_2024-Update
Potri.003G124700 No alias Function unknown 0.02 Orthogroups_2024-Update
Seita.1G116900.1 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.07 Orthogroups_2024-Update
Sobic.004G011000.1 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 Orthogroups_2024-Update
evm.model.tig00020964.11 No alias (at5g41190 : 112.0) CONTAINS InterPro DOMAIN/s: Nin one... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR014881 NOB1_Zn-bd 280 350
No external refs found!