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  5. GRMZM2G080176

GRMZM2G080176


Description : nuclear RNA polymerase C1


Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G080176
Cluster HCCA clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Sopen11g030400 No alias RNA polymerase Rpb1, domain 5 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004807 triose-phosphate isomerase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0010011 auxin binding IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0034227 tRNA thio-modification IEP Predicted GO
MF GO:0042562 hormone binding IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 347 513
IPR007081 RNA_pol_Rpb1_5 842 907
IPR007080 RNA_pol_Rpb1_1 22 345
IPR007066 RNA_pol_Rpb1_3 516 704
IPR007083 RNA_pol_Rpb1_4 735 835
No external refs found!