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  5. GRMZM2G092123

GRMZM2G092123


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0007117 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G092123
Cluster HCCA clusters: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
Pp1s266_30V6 No alias F9G14.140; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.9G444700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
evm.model.contig_3420.3 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 36 96
IPR002885 Pentatricopeptide_repeat 209 265
No external refs found!