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  5. GRMZM2G092616

GRMZM2G092616


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G092616
Cluster HCCA clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Bradi2g39600 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
HORVU0Hr1G028990.3 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G107820.4 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G269400.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G438900.1 No alias regulatory protein *(RLD) of gravity sensing 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016972 thiol oxidase activity IEP Predicted GO
MF GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity IEP Predicted GO
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Predicted GO
MF GO:0051011 microtubule minus-end binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000306 Znf_FYVE 421 487
IPR000408 Reg_chr_condens 370 417
IPR000408 Reg_chr_condens 265 312
IPR000408 Reg_chr_condens 147 198
IPR000408 Reg_chr_condens 317 365
IPR000408 Reg_chr_condens 203 251
IPR000408 Reg_chr_condens 95 144
IPR027988 BRX_N 670 699
IPR013591 Brevis_radix_dom 840 894
No external refs found!