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  5. GRMZM2G095043

GRMZM2G095043


Description : transducin family protein / WD-40 repeat family protein


Gene families : OG_42_0005652 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005652_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G095043
Cluster HCCA clusters: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
404454 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
At5g11240 No alias At5g11240 [Source:UniProtKB/TrEMBL;Acc:B5X503] 0.06 Orthogroups_2024-Update
Bradi1g64927 No alias transducin family protein / WD-40 repeat family protein 0.06 Orthogroups_2024-Update
Brara.J02245.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Cre12.g538500 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G054880.13 No alias Unknown function 0.05 Orthogroups_2024-Update
Mp5g00060.1 No alias no hits & (original description: none) 0.03 Orthogroups_2024-Update
Seita.9G435300.1 No alias Unknown function 0.1 Orthogroups_2024-Update
Sobic.001G401400.1 No alias Unknown function 0.16 Orthogroups_2024-Update
Solyc02g030080 No alias transducin family protein / WD-40 repeat family protein... 0.05 Orthogroups_2024-Update
evm.model.contig_611.2 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00000123.23 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
CC GO:0000313 organellar ribosome IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005761 mitochondrial ribosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 10 35
IPR001680 WD40_repeat 190 228
IPR007148 SSU_processome_Utp12 484 573
No external refs found!