Description : Pseudouridine synthase family protein
Gene families : OG_42_0004796 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004796_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Zea release: GRMZM2G112352 | |
Cluster | HCCA clusters: Cluster_97 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi3g51240 | No alias | Pseudouridine synthase family protein | 0.02 | Orthogroups_2024-Update | |
Glyma.02G202300 | No alias | Pseudouridine synthase family protein | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | InterProScan predictions |
MF | GO:0003723 | RNA binding | IEA | InterProScan predictions |
BP | GO:0009451 | RNA modification | IEA | InterProScan predictions |
MF | GO:0009982 | pseudouridine synthase activity | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000176 | nuclear exosome (RNase complex) | IEP | Predicted GO |
CC | GO:0000178 | exosome (RNase complex) | IEP | Predicted GO |
BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Predicted GO |
MF | GO:0004190 | aspartic-type endopeptidase activity | IEP | Predicted GO |
MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
BP | GO:0008593 | regulation of Notch signaling pathway | IEP | Predicted GO |
BP | GO:0009967 | positive regulation of signal transduction | IEP | Predicted GO |
BP | GO:0010647 | positive regulation of cell communication | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
BP | GO:0023056 | positive regulation of signaling | IEP | Predicted GO |
CC | GO:0033588 | Elongator holoenzyme complex | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
MF | GO:0042393 | histone binding | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0045747 | positive regulation of Notch signaling pathway | IEP | Predicted GO |
BP | GO:0048584 | positive regulation of response to stimulus | IEP | Predicted GO |
MF | GO:0070001 | aspartic-type peptidase activity | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
CC | GO:1905354 | exoribonuclease complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR020097 | PsdUridine_synth_TruA_a/b_dom | 356 | 461 |
No external refs found! |