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  5. GRMZM2G130746

GRMZM2G130746


Description : histone H2A 12


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G130746
Cluster HCCA clusters: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
A4A49_29055 No alias putative histone h2a.4 0.03 Orthogroups_2024-Update
Brara.J01356.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Cre06.g265350 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g268050 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g273900 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g275850 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre12.g504750 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g708550 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g713400 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Glyma.03G241800 No alias gamma histone variant H2AX 0.02 Orthogroups_2024-Update
Glyma.13G333900 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.19G234100 No alias histone H2A 7 0.03 Orthogroups_2024-Update
HORVU4Hr1G058810.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G100100.3 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G100110.4 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
LOC_Os05g02300 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
MA_100910g0010 No alias (q6l500|h2a4_orysa : 148.0) Probable histone H2A.4 -... 0.03 Orthogroups_2024-Update
Potri.013G028800 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Pp1s55_112V6 No alias histone 2 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0003006 developmental process involved in reproduction IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
BP GO:0009790 embryo development IEP Predicted GO
BP GO:0009793 embryo development ending in seed dormancy IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 102 134
IPR007125 Histone_H2A/H2B/H3 22 99
No external refs found!