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Description : high mobility group B4
Gene families : OG_42_0000453 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000453_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea release: GRMZM2G156785 | |
| Cluster | HCCA clusters: Cluster_193 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GRMZM5G834758 | No alias | high mobility group B3 | 0.03 | Orthogroups_2024-Update | |
| Glyma.09G198300 | No alias | high mobility group B2 | 0.04 | Orthogroups_2024-Update | |
| Glyma.10G288300 | No alias | high-mobility group box 6 | 0.03 | Orthogroups_2024-Update | |
| Glyma.16G116300 | No alias | high mobility group B2 | 0.03 | Orthogroups_2024-Update | |
| LOC_Os08g01100 | No alias | HMG1/2, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| MA_10176251g0010 | No alias | (original description: no original description) | 0.02 | Orthogroups_2024-Update | |
| Sopen03g005980 | No alias | HMG (high mobility group) box | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000062 | fatty-acyl-CoA binding | IEP | Predicted GO |
| MF | GO:0000213 | tRNA-intron endonuclease activity | IEP | Predicted GO |
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
| BP | GO:0003006 | developmental process involved in reproduction | IEP | Predicted GO |
| MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | Predicted GO |
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Predicted GO |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
| BP | GO:0006658 | phosphatidylserine metabolic process | IEP | Predicted GO |
| BP | GO:0006659 | phosphatidylserine biosynthetic process | IEP | Predicted GO |
| BP | GO:0006766 | vitamin metabolic process | IEP | Predicted GO |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Predicted GO |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Predicted GO |
| MF | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | IEP | Predicted GO |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | Predicted GO |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Predicted GO |
| BP | GO:0009790 | embryo development | IEP | Predicted GO |
| BP | GO:0009793 | embryo development ending in seed dormancy | IEP | Predicted GO |
| MF | GO:0016872 | intramolecular lyase activity | IEP | Predicted GO |
| MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Predicted GO |
| MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Predicted GO |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Predicted GO |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Predicted GO |
| MF | GO:0047429 | nucleoside-triphosphate diphosphatase activity | IEP | Predicted GO |
| MF | GO:0070403 | NAD+ binding | IEP | Predicted GO |
| MF | GO:1901567 | fatty acid derivative binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR009071 | HMG_box_dom | 34 | 101 |
| No external refs found! |