GRMZM2G159592

Description : related to ABI3/VP1 1

Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G159592
Cluster	HCCA clusters: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
A4A49_27413	No alias	ap2erf and b3 domain-containing transcription factor rav1	0.03	Orthogroups_2024-Update
At1g01030	No alias	NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3]	0.03	Orthogroups_2024-Update
Brara.C03374.1	No alias	RAV/NGATHA-type transcription factor	0.02	Orthogroups_2024-Update
Brara.D02192.1	No alias	RAV/NGATHA-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I03099.1	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.04	Orthogroups_2024-Update
GRMZM2G082227	No alias	AP2/B3-like transcriptional factor family protein	0.03	Orthogroups_2024-Update
LOC_Os01g49830	No alias	B3 DNA binding domain containing protein, expressed	0.03	Orthogroups_2024-Update
PSME_00035556-RA	No alias	(at3g25730 : 293.0) ethylene response DNA binding factor...	0.03	Orthogroups_2024-Update
Potri.010G129200	No alias	AP2/B3 transcription factor family protein	0.03	Orthogroups_2024-Update
Sobic.003G265200.1	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.06	Orthogroups_2024-Update
Solyc10g083210	No alias	B3 domain-containing protein family (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Sopen04g002090	No alias	B3 DNA binding domain	0.03	Orthogroups_2024-Update
Sopen05g005620	No alias	B3 DNA binding domain	0.02	Orthogroups_2024-Update
Sopen08g004530	No alias	B3 DNA binding domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Predicted GO
MF	GO:0000702	oxidized base lesion DNA N-glycosylase activity	IEP	Predicted GO
BP	GO:0001932	regulation of protein phosphorylation	IEP	Predicted GO
MF	GO:0003684	damaged DNA binding	IEP	Predicted GO
MF	GO:0004788	thiamine diphosphokinase activity	IEP	Predicted GO
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Predicted GO
CC	GO:0005669	transcription factor TFIID complex	IEP	Predicted GO
BP	GO:0006289	nucleotide-excision repair	IEP	Predicted GO
MF	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity	IEP	Predicted GO
BP	GO:0009229	thiamine diphosphate biosynthetic process	IEP	Predicted GO
MF	GO:0016778	diphosphotransferase activity	IEP	Predicted GO
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predicted GO
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Predicted GO
MF	GO:0019900	kinase binding	IEP	Predicted GO
MF	GO:0019901	protein kinase binding	IEP	Predicted GO
MF	GO:0030975	thiamine binding	IEP	Predicted GO
BP	GO:0031123	RNA 3'-end processing	IEP	Predicted GO
BP	GO:0031124	mRNA 3'-end processing	IEP	Predicted GO
BP	GO:0031399	regulation of protein modification process	IEP	Predicted GO
BP	GO:0042325	regulation of phosphorylation	IEP	Predicted GO
BP	GO:0042357	thiamine diphosphate metabolic process	IEP	Predicted GO
BP	GO:0043549	regulation of kinase activity	IEP	Predicted GO
BP	GO:0045859	regulation of protein kinase activity	IEP	Predicted GO
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Predicted GO
BP	GO:0051338	regulation of transferase activity	IEP	Predicted GO
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Predicted GO
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	76	124
IPR003340	B3_DNA-bd	206	302

External Links

No external refs found!

GRMZM2G159592

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation