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  5. GRMZM2G162184

GRMZM2G162184


Description : histone mono-ubiquitination 1


Gene families : OG_42_0001988 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001988_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G162184
Cluster HCCA clusters: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
Bradi4g25177 No alias histone mono-ubiquitination 1 0.03 Orthogroups_2024-Update
Glyma.02G267300 No alias histone mono-ubiquitination 2 0.03 Orthogroups_2024-Update
Glyma.14G050200 No alias histone mono-ubiquitination 2 0.06 Orthogroups_2024-Update
Mp6g03540.1 No alias RING-HC-class E3 ligase 0.02 Orthogroups_2024-Update
PSME_00011603-RA No alias (at1g55250 : 646.0) Encodes one of two orthologous E3... 0.04 Orthogroups_2024-Update
Potri.001G008800 No alias histone mono-ubiquitination 2 0.03 Orthogroups_2024-Update
Seita.4G189800.1 No alias E3 ubiquitin ligase *(HUB) 0.05 Orthogroups_2024-Update
Sobic.010G247800.1 No alias E3 ubiquitin ligase *(HUB) 0.02 Orthogroups_2024-Update
evm.model.tig00000169.18 No alias (at1g55250 : 113.0) Encodes one of two orthologous E3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!