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  5. At1g47270

At1g47270


Description : Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]


Gene families : OG_42_0000271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g47270
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Bradi1g62390 No alias tubby like protein 3 0.03 Orthogroups_2024-Update
Bradi5g27110 No alias tubby like protein 1 0.03 Orthogroups_2024-Update
Brara.B02178.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.H00415.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.J00533.1 No alias TUB-type transcription factor 0.05 Orthogroups_2024-Update
GRMZM2G001272 No alias tubby like protein 10 0.02 Orthogroups_2024-Update
HORVU5Hr1G040000.2 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Potri.002G034600 No alias tubby like protein 6 0.02 Orthogroups_2024-Update
Potri.008G195200 No alias tubby like protein 3 0.03 Orthogroups_2024-Update
Seita.3G227800.1 No alias TUB-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.001G372000.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Solyc01g067680 No alias Tubby-like F-box protein (AHRD V3.3 *** M1APZ0_SOLTU) 0.03 Orthogroups_2024-Update
Solyc02g062670 No alias Tubby-like F-box protein (AHRD V3.3 *** M1C232_SOLTU) 0.04 Orthogroups_2024-Update
Solyc04g071440 No alias Tubby-like F-box protein (AHRD V3.3 *** K4BTD6_SOLLC) 0.03 Orthogroups_2024-Update
Solyc04g071750 No alias Tubby-like F-box protein (AHRD V3.3 *** K4BTG5_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
BP GO:0006012 galactose metabolic process IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR000007 Tubby_C 132 408
IPR001810 F-box_dom 69 118
No external refs found!