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At1g48630


Description : RACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908]


Gene families : OG_42_0002129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g48630
Cluster HCCA clusters: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
266532 No alias receptor for activated C kinase 1B 0.04 Orthogroups_2024-Update
A4A49_37187 No alias guanine nucleotide-binding protein subunit beta-like protein 0.03 Orthogroups_2024-Update
Bradi2g17350 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A02955.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.E02380.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.F01274.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.H02438.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.I04799.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
GRMZM2G040477 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G051600 No alias receptor for activated C kinase 1C 0.03 Orthogroups_2024-Update
HORVU1Hr1G083710.2 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
HORVU3Hr1G063670.2 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
PSME_00054687-RA No alias (o24076|gblp_medsa : 541.0) Guanine nucleotide-binding... 0.03 Orthogroups_2024-Update
Seita.3G155500.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Seita.5G275300.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Sobic.003G261100.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Sobic.009G223300.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Solyc03g119040 No alias LeArcA2 protein containing 7 WD40 repeats 0.03 Orthogroups_2024-Update
Sopen03g037930 No alias WD domain, G-beta repeat 0.05 Orthogroups_2024-Update
Sopen06g026300 No alias WD domain, G-beta repeat 0.05 Orthogroups_2024-Update
Sopen12g020110 No alias WD domain, G-beta repeat 0.06 Orthogroups_2024-Update
evm.model.contig_2334.1 No alias (p25387|gblp_chlre : 464.0) Guanine nucleotide-binding... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0003896 DNA primase activity IEP Predicted GO
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 226 261
IPR001680 WD40_repeat 10 44
IPR001680 WD40_repeat 56 91
IPR001680 WD40_repeat 96 133
IPR001680 WD40_repeat 295 321
IPR001680 WD40_repeat 137 179
IPR001680 WD40_repeat 187 221
No external refs found!