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GRMZM2G348602


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G348602
Cluster HCCA clusters: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
At3g48950 No alias Endo-polygalacturonase-like protein... 0.02 Orthogroups_2024-Update
Brara.K00653.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
LOC_Os01g43160 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g54030 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g50960 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s252_60V6 No alias glycoside hydrolase family 28 expressed 0.02 Orthogroups_2024-Update
Seita.2G096000.1 No alias EC_3.2 glycosylase 0.06 Orthogroups_2024-Update
Sobic.004G319600.2 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Solyc05g049980 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G61490.4) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004347 glucose-6-phosphate isomerase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 88 272
No external refs found!