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  5. GRMZM2G381395

GRMZM2G381395


Description : DNA/RNA polymerases superfamily protein


Gene families : OG_42_0001092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G381395
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Bradi1g31066 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g08880 No alias DNA/RNA polymerases superfamily protein 0.05 Orthogroups_2024-Update
Brara.B00618.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.03 Orthogroups_2024-Update
Brara.I04503.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.04 Orthogroups_2024-Update
Glyma.08G253800 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G263000 No alias male gametophyte defective 3 0.03 Orthogroups_2024-Update
Glyma.17G071600 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G276200 No alias DNA/RNA polymerases superfamily protein 0.04 Orthogroups_2024-Update
Potri.004G111600 No alias DNA/RNA polymerases superfamily protein 0.02 Orthogroups_2024-Update
Potri.008G112800 No alias male gametophyte defective 3 0.03 Orthogroups_2024-Update
Potri.010G136700 No alias male gametophyte defective 3 0.03 Orthogroups_2024-Update
Potri.018G103300 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
Pp1s246_118V6 No alias rna polymerase 0.03 Orthogroups_2024-Update
Pp1s256_41V6 No alias rna polymerase 0.02 Orthogroups_2024-Update
Sobic.002G378100.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.09 Orthogroups_2024-Update
Sobic.010G211500.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.04 Orthogroups_2024-Update
Sopen05g006460 No alias DNA-dependent RNA polymerase 0.03 Orthogroups_2024-Update
Sopen07g002060 No alias DNA-dependent RNA polymerase 0.03 Orthogroups_2024-Update
evm.model.contig_511.3 No alias (at2g24120 : 493.0) SCABRA 3 (SCA3); FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
evm.model.tig00021493.48 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
evm.model.tig00021493.49 No alias (q8l6j3|rpo2b_tobac : 377.0) DNA-directed RNA polymerase... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR029262 RPOL_N 141 461
IPR002092 DNA-dir_Rpol_phage-type 584 975
No external refs found!