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  5. GRMZM2G403797

GRMZM2G403797


Description : Ubiquitin carboxyl-terminal hydrolase family protein


Gene families : OG_42_0004417 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004417_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G403797
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
Bradi2g15890 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.04 Orthogroups_2024-Update
Brara.I00071.1 No alias plastidial RNA basal splicing factor *(WTF1) 0.05 Orthogroups_2024-Update
Glyma.03G002600 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 Orthogroups_2024-Update
LOC_Os05g49610 No alias ubiquitin carboxyl-terminal hydrolase, family 1,... 0.03 Orthogroups_2024-Update
Potri.002G169300 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 Orthogroups_2024-Update
Potri.014G096801 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.02 Orthogroups_2024-Update
Seita.3G139500.1 No alias plastidial RNA basal splicing factor *(WTF1) 0.03 Orthogroups_2024-Update
Sobic.009G238100.2 No alias plastidial RNA basal splicing factor *(WTF1) 0.03 Orthogroups_2024-Update
Solyc01g095680 No alias Ubiquitin carboxyl-terminal hydrolase family protein... 0.03 Orthogroups_2024-Update
Sopen01g039420 No alias Plant organelle RNA recognition domain 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR021099 PORR_domain 138 466
No external refs found!