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  5. GRMZM2G449123

GRMZM2G449123


Description : pumilio 5


Gene families : OG_42_0003031 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003031_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G449123
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
At3g20250 No alias PUM5 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRW8] 0.03 Orthogroups_2024-Update
Glyma.15G163900 No alias pumilio 5 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 751 783
IPR001313 Pumilio_RNA-bd_rpt 824 849
IPR001313 Pumilio_RNA-bd_rpt 715 747
IPR001313 Pumilio_RNA-bd_rpt 932 964
IPR001313 Pumilio_RNA-bd_rpt 976 1007
IPR001313 Pumilio_RNA-bd_rpt 859 886
IPR001313 Pumilio_RNA-bd_rpt 787 816
No external refs found!