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  5. Solyc03g043580

Solyc03g043580


Description : B3 domain-containing transcription factor VRN1 (AHRD V3.3 *** A0A0B0MJI2_GOSAR)


Gene families : OG_42_0000768 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000768_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g043580
Cluster HCCA clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G114900 No alias AP2/B3-like transcriptional factor family protein 0.04 Orthogroups_2024-Update
Potri.014G057100 No alias AP2/B3-like transcriptional factor family protein 0.02 Orthogroups_2024-Update
Potri.018G124500 No alias AP2/B3-like transcriptional factor family protein 0.04 Orthogroups_2024-Update
Solyc07g054630 No alias B3 domain-containing transcription factor VRN1 (AHRD... 0.02 Orthogroups_2024-Update
Solyc08g068540 No alias B3 domain-containing protein (AHRD V3.3 *** W9QJE4_9ROSA) 0.04 Orthogroups_2024-Update
Sopen01g017870 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 235 304
IPR003340 B3_DNA-bd 28 109
No external refs found!