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  5. Brara.A00681.1

Brara.A00681.1


Description : component *(eIF-iso4G) of eIF-iso4F unwinding complex


Gene families : OG_42_0001957 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001957_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A00681.1
Cluster HCAA Clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
Pp1s65_80V6 No alias eukaryotic translation initiation factor 4 gamma 0.01 Orthogroups_2024-Update
Pp1s65_89V6 No alias eukaryotic translation initiation factor 4 gamma 0.01 Orthogroups_2024-Update
evm.model.contig_2075.12 No alias (at3g60240 : 168.0) protein synthesis initiation factor... 0.01 Orthogroups_2024-Update
evm.model.tig00000076.150 No alias (at5g57870 : 107.0) Encodes a putative eukaryotic... 0.01 Orthogroups_2024-Update
evm.model.tig00021350.5 No alias (at3g60240 : 194.0) protein synthesis initiation factor... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0000469 cleavage involved in rRNA processing IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
BP GO:0015689 molybdate ion transport IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032392 DNA geometric change IEP Predicted GO
BP GO:0032508 DNA duplex unwinding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003891 Initiation_fac_eIF4g_MI 578 684
IPR003890 MIF4G-like_typ-3 173 398
No external refs found!