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Description : RING-H2-class ATL-subclass E3 ubiquitin ligase
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.A00916.1 | |
| Cluster | HCAA Clusters: Cluster_30 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_18667 | No alias | ring-h2 finger protein atl18 | 0.03 | Orthogroups_2024-Update | |
| At4g09110 | No alias | Putative RING-H2 finger protein ATL35... | 0.03 | Orthogroups_2024-Update | |
| Bradi3g38493 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.F00391.1 | No alias | regulatory ubiquitin-protein ligase *(PRU2) &... | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G324111 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G401997 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.03G203400 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| HORVU3Hr1G028280.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| HORVU5Hr1G079940.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G067020.2 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| LOC_Os03g28080 | No alias | ring-H2 zinc finger protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os12g02220 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.03 | Orthogroups_2024-Update | |
| Potri.002G006400 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.002G165200 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.008G019000 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Seita.1G186600.1 | No alias | regulatory ubiquitin-protein ligase *(PRU2) | 0.02 | Orthogroups_2024-Update | |
| Seita.1G270700.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| Seita.4G120300.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.04 | Orthogroups_2024-Update | |
| Seita.4G171200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G178400.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| Sobic.009G056600.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| Sobic.009G209500.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.04 | Orthogroups_2024-Update | |
| Sopen02g031720 | No alias | Ring finger domain | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Predicted GO |
| MF | GO:0003830 | beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | IEP | Predicted GO |
| BP | GO:0006487 | protein N-linked glycosylation | IEP | Predicted GO |
| BP | GO:0006488 | dolichol-linked oligosaccharide biosynthetic process | IEP | Predicted GO |
| BP | GO:0006490 | oligosaccharide-lipid intermediate biosynthetic process | IEP | Predicted GO |
| BP | GO:0006888 | ER to Golgi vesicle-mediated transport | IEP | Predicted GO |
| MF | GO:0008375 | acetylglucosaminyltransferase activity | IEP | Predicted GO |
| BP | GO:0010207 | photosystem II assembly | IEP | Predicted GO |
| BP | GO:0016485 | protein processing | IEP | Predicted GO |
| MF | GO:0016853 | isomerase activity | IEP | Predicted GO |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Predicted GO |
| BP | GO:0022900 | electron transport chain | IEP | Predicted GO |
| BP | GO:0022904 | respiratory electron transport chain | IEP | Predicted GO |
| CC | GO:0030120 | vesicle coat | IEP | Predicted GO |
| CC | GO:0030127 | COPII vesicle coat | IEP | Predicted GO |
| CC | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | IEP | Predicted GO |
| CC | GO:0033180 | proton-transporting V-type ATPase, V1 domain | IEP | Predicted GO |
| MF | GO:0036442 | proton-exporting ATPase activity | IEP | Predicted GO |
| CC | GO:0044425 | membrane part | IEP | Predicted GO |
| CC | GO:0044433 | cytoplasmic vesicle part | IEP | Predicted GO |
| MF | GO:0046961 | proton-transporting ATPase activity, rotational mechanism | IEP | Predicted GO |
| BP | GO:0048193 | Golgi vesicle transport | IEP | Predicted GO |
| BP | GO:0051604 | protein maturation | IEP | Predicted GO |
| BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
| BP | GO:0071586 | CAAX-box protein processing | IEP | Predicted GO |
| CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
| MF | GO:0140103 | catalytic activity, acting on a glycoprotein | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 154 | 197 |
| No external refs found! |