1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.A01548.1

Brara.A01548.1


Description : component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im) complex


Gene families : OG_42_0002246 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002246_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A01548.1
Cluster HCAA Clusters: Cluster_240

Target Alias Description ECC score Gene Family Method Actions
Cre10.g462700 No alias Cleavage/polyadenylation specificity factor, 25kDa subunit 0.01 Orthogroups_2024-Update
Solyc01g009630 No alias Cleavage and polyadenylation specificity factor subunit... 0.03 Orthogroups_2024-Update
Sopen01g005150 No alias Nucleotide hydrolase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA 16Dec
CC GO:0005849 mRNA cleavage factor complex IEA 16Dec
BP GO:0006378 mRNA polyadenylation IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003714 transcription corepressor activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR016706 Cleav_polyA_spec_factor_su5 7 193
No external refs found!