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  5. Brara.A01786.1

Brara.A01786.1


Description : component *(VPS22) of ESCRT-II complex


Gene families : OG_42_0007552 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007552_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A01786.1
Cluster HCAA Clusters: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
Brara.K00112.1 No alias component *(VPS22) of ESCRT-II complex 0.05 Orthogroups_2024-Update
LOC_Os09g36020 No alias EAP30/Vps36 family domain containing protein, expressed 0.02 Orthogroups_2024-Update
Seita.2G283200.1 No alias component *(VPS22) of ESCRT-II complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
BP GO:0000966 RNA 5'-end processing IEP Predicted GO
BP GO:0001682 tRNA 5'-leader removal IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
CC GO:0030677 ribonuclease P complex IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034471 ncRNA 5'-end processing IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
CC GO:0071821 FANCM-MHF complex IEP Predicted GO
BP GO:0099116 tRNA 5'-end processing IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!