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  5. Brara.A02541.1

Brara.A02541.1


Description : component *(LHCa3) of LHC-I complex


Gene families : OG_42_0005254 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02541.1
Cluster HCAA Clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
160411 No alias photosystem I light harvesting complex gene 3 0.02 Orthogroups_2024-Update
A4A49_09113 No alias chlorophyll a-b binding protein 8, chloroplastic 0.1 Orthogroups_2024-Update
A4A49_28400 No alias chlorophyll a-b binding protein 8, chloroplastic 0.09 Orthogroups_2024-Update
At1g61520 No alias Chlorophyll a-b binding protein, chloroplastic... 0.12 Orthogroups_2024-Update
Bradi3g07190 No alias photosystem I light harvesting complex gene 3 0.06 Orthogroups_2024-Update
Cre11.g467573 No alias photosystem I light harvesting complex gene 3 0.09 Orthogroups_2024-Update
Glyma.02G309500 No alias photosystem I light harvesting complex gene 3 0.08 Orthogroups_2024-Update
Glyma.14G003400 No alias photosystem I light harvesting complex gene 3 0.1 Orthogroups_2024-Update
HORVU6Hr1G033160.11 No alias component *(LHCa3) of LHC-I complex 0.07 Orthogroups_2024-Update
Kfl00560_0090 kfl00560_0090_v1.1 (at1g61520 : 268.0) PSI type III chlorophyll a/b-binding... 0.09 Orthogroups_2024-Update
LOC_Os02g10390 No alias chlorophyll A-B binding protein, putative, expressed 0.05 Orthogroups_2024-Update
MA_815900g0010 No alias (at1g61520 : 372.0) PSI type III chlorophyll a/b-binding... 0.04 Orthogroups_2024-Update
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.08 Orthogroups_2024-Update
PSME_00027596-RA No alias (at1g61520 : 359.0) PSI type III chlorophyll a/b-binding... 0.03 Orthogroups_2024-Update
Pp1s197_123V6 No alias type iii chlorophyll a b-binding protein 0.11 Orthogroups_2024-Update
Pp1s214_86V6 No alias type iii chlorophyll a b-binding protein 0.1 Orthogroups_2024-Update
Pp1s214_87V6 No alias type iii chlorophyll a b-binding protein 0.09 Orthogroups_2024-Update
Pp1s429_33V6 No alias type iii chlorophyll a b-binding protein 0.14 Orthogroups_2024-Update
Seita.4G219400.1 No alias component *(LHCa3) of LHC-I complex 0.07 Orthogroups_2024-Update
Sobic.010G189300.1 No alias component *(LHCa3) of LHC-I complex 0.1 Orthogroups_2024-Update
Solyc10g007690 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.09 Orthogroups_2024-Update
Solyc12g011280 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.12 Orthogroups_2024-Update
Sopen10g003600 No alias Chlorophyll A-B binding protein 0.09 Orthogroups_2024-Update
Sopen12g006610 No alias Chlorophyll A-B binding protein 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004359 glutaminase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
MF GO:0010242 oxygen evolving activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0042816 vitamin B6 metabolic process IEP Predicted GO
BP GO:0042819 vitamin B6 biosynthetic process IEP Predicted GO
BP GO:0042822 pyridoxal phosphate metabolic process IEP Predicted GO
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046184 aldehyde biosynthetic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 64 242
No external refs found!