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  5. Brara.A02841.1

Brara.A02841.1


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02841.1
Cluster HCAA Clusters: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Bradi1g20480 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g37800 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Brara.C02094.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.G02768.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU0Hr1G002870.3 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G051760.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os07g43740 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os08g38060 No alias RING finger protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_219769g0010 No alias (at5g20910 : 155.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Seita.2G181600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G401300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.8G172700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G165900.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 19 51
IPR001841 Znf_RING 202 245
No external refs found!