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  5. Brara.A02957.1

Brara.A02957.1


Description : beta-glucosidase involved in pollen intine formation & EC_3.2 glycosylase


Gene families : OG_42_0000033 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000033_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A02957.1
Cluster HCAA Clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
151109 No alias beta glucosidase 42 0.02 Orthogroups_2024-Update
73365 No alias beta glucosidase 27 0.02 Orthogroups_2024-Update
A4A49_02279 No alias beta-glucosidase 46 0.03 Orthogroups_2024-Update
LOC_Os03g49600 No alias Os3bglu7 - beta-glucosidase, exo-beta-glucanse, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g17650 No alias Os10bglu34 - beta-glucosidase homologue, similar to... 0.02 Orthogroups_2024-Update
MA_119005g0010 No alias (at1g26560 : 476.0) beta glucosidase 40 (BGLU40);... 0.03 Orthogroups_2024-Update
MA_119280g0010 No alias (at4g21760 : 280.0) beta-glucosidase 47 (BGLU47);... 0.03 Orthogroups_2024-Update
MA_4535g0010 No alias (at1g26560 : 755.0) beta glucosidase 40 (BGLU40);... 0.02 Orthogroups_2024-Update
MA_488148g0010 No alias (at1g26560 : 508.0) beta glucosidase 40 (BGLU40);... 0.03 Orthogroups_2024-Update
PSME_00010142-RA No alias (at1g02850 : 502.0) beta glucosidase 11 (BGLU11);... 0.03 Orthogroups_2024-Update
Seita.9G492500.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Sobic.010G233900.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Solyc01g074030 No alias Beta-glucosidase 01 (AHRD V3.3 *** B5M9E4_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1902495 transmembrane transporter complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
CC GO:1990351 transporter complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001360 Glyco_hydro_1 43 513
No external refs found!