Brara.B00052.1

Description : transcription factor *(DOF)

Gene families : OG_42_0000027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.B00052.1
Cluster	HCAA Clusters: Cluster_156

Target	Alias	Description	ECC score	Gene Family Method
At1g26790	No alias	Dof-type zinc finger DNA-binding family protein...	0.03	Orthogroups_2024-Update
At2g34140	No alias	Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]	0.05	Orthogroups_2024-Update
At4g00940	No alias	Dof zinc finger protein DOF4.1...	0.04	Orthogroups_2024-Update
At4g38000	No alias	DOF4.7 [Source:UniProtKB/TrEMBL;Acc:A0A178V5K8]	0.04	Orthogroups_2024-Update
At5g39660	No alias	Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]	0.03	Orthogroups_2024-Update
Bradi2g19930	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Orthogroups_2024-Update
Bradi3g25670	No alias	cycling DOF factor 1	0.03	Orthogroups_2024-Update
Bradi3g51510	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Orthogroups_2024-Update
Bradi4g04260	No alias	OBF-binding protein 3	0.07	Orthogroups_2024-Update
Brara.F01530.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Brara.I01305.1	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
Brara.I02955.1	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
GRMZM2G064655	No alias	TARGET OF MONOPTEROS 6	0.04	Orthogroups_2024-Update
GRMZM5G880268	No alias	OBF-binding protein 3	0.03	Orthogroups_2024-Update
Glyma.02G108600	No alias	cycling DOF factor 2	0.02	Orthogroups_2024-Update
Glyma.05G025900	No alias	cycling DOF factor 3	0.03	Orthogroups_2024-Update
Glyma.07G193900	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Glyma.13G335200	No alias	OBF-binding protein 3	0.03	Orthogroups_2024-Update
HORVU1Hr1G074140.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
HORVU2Hr1G095390.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
HORVU2Hr1G119160.3	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
LOC_Os01g55340	No alias	dof zinc finger domain containing protein, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os08g38220	No alias	dof zinc finger domain containing protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_18267g0010	No alias	(at5g62940 : 141.0) HCA2 induces the formation of...	0.03	Orthogroups_2024-Update
PSME_00028077-RA	No alias	(at5g39660 : 211.0) Dof-type zinc finger...	0.02	Orthogroups_2024-Update
Potri.003G034200	No alias	DOF zinc finger protein 1	0.03	Orthogroups_2024-Update
Potri.012G081300	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Orthogroups_2024-Update
Potri.015G048300	No alias	OBF binding protein 4	0.03	Orthogroups_2024-Update
Seita.1G290700.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Seita.9G206300.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Seita.9G259300.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Sobic.001G078700.1	No alias	transcription factor *(DOF)	0.06	Orthogroups_2024-Update
Sobic.007G223200.2	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
Solyc02g090310	No alias	Dof zinc finger protein (AHRD V3.3 - W9QGW0_9ROSA)	0.04	Orthogroups_2024-Update
Solyc06g005130	No alias	Dof zinc finger protein (AHRD V3.3 *** W9RMR9_9ROSA)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	Predicted GO
MF	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	IEP	Predicted GO
BP	GO:0006265	DNA topological change	IEP	Predicted GO
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Predicted GO
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
MF	GO:0008094	DNA-dependent ATPase activity	IEP	Predicted GO
MF	GO:0061505	DNA topoisomerase II activity	IEP	Predicted GO
BP	GO:0071103	DNA conformation change	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	94	149

External Links

No external refs found!

Brara.B00052.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation