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  5. Brara.B00618.1

Brara.B00618.1


Description : nuclear-encoded organellar RNA polymerase *(NEP)


Gene families : OG_42_0001092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B00618.1
Cluster HCAA Clusters: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
At5g15700 No alias DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75] 0.03 Orthogroups_2024-Update
Bradi1g31066 No alias DNA/RNA polymerases superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g08880 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
Cre02.g075600 No alias DNA/RNA polymerases superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G115564 No alias DNA/RNA polymerases superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G381395 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G071600 No alias DNA/RNA polymerases superfamily protein 0.06 Orthogroups_2024-Update
Glyma.18G276200 No alias DNA/RNA polymerases superfamily protein 0.06 Orthogroups_2024-Update
LOC_Os06g44230 No alias DNA-directed RNA polymerase 3A, chloroplast precursor,... 0.03 Orthogroups_2024-Update
LOC_Os09g07120 No alias DNA-directed RNA polymerase 1B, mitochondrial precursor,... 0.04 Orthogroups_2024-Update
Potri.004G111600 No alias DNA/RNA polymerases superfamily protein 0.04 Orthogroups_2024-Update
Potri.006G181100 No alias DNA/RNA polymerases superfamily protein 0.02 Orthogroups_2024-Update
Potri.018G103300 No alias DNA/RNA polymerases superfamily protein 0.04 Orthogroups_2024-Update
Pp1s256_41V6 No alias rna polymerase 0.03 Orthogroups_2024-Update
Seita.4G194800.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.03 Orthogroups_2024-Update
Sobic.002G378100.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.07 Orthogroups_2024-Update
Sobic.010G211500.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.02 Orthogroups_2024-Update
Solyc05g010660 No alias DNA-directed RNA polymerase (AHRD V3.3 *** K4BXN8_SOLLC) 0.03 Orthogroups_2024-Update
Solyc07g005930 No alias DNA-directed RNA polymerase (AHRD V3.3 *** K4CB64_SOLLC) 0.03 Orthogroups_2024-Update
Sopen07g002060 No alias DNA-dependent RNA polymerase 0.05 Orthogroups_2024-Update
evm.model.contig_511.3 No alias (at2g24120 : 493.0) SCABRA 3 (SCA3); FUNCTIONS IN:... 0.04 Orthogroups_2024-Update
evm.model.tig00021493.48 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00021493.49 No alias (q8l6j3|rpo2b_tobac : 377.0) DNA-directed RNA polymerase... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030686 90S preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
CC GO:0042575 DNA polymerase complex IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043625 delta DNA polymerase complex IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR029262 RPOL_N 176 496
No external refs found!