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  5. Brara.B01878.1

Brara.B01878.1


Description : component *(uL16) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001900 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001900_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B01878.1
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
A4A49_60639 No alias 60s ribosomal protein l10 0.03 Orthogroups_2024-Update
At1g26910 No alias 60S ribosomal protein L10-2... 0.03 Orthogroups_2024-Update
At1g66580 No alias 60S ribosomal protein L10-3... 0.03 Orthogroups_2024-Update
Brara.G02465.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Cre09.g388200 No alias senescence associated gene 24 0.02 Orthogroups_2024-Update
HORVU1Hr1G024710.2 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Kfl00865_0050 kfl00865_0050_v1.1 (p93847|rl10_solme : 387.0) 60S ribosomal protein L10... 0.02 Orthogroups_2024-Update
Pp1s22_94V6 No alias 60s ribosomal protein l10-3 0.04 Orthogroups_2024-Update
Pp1s2_197V6 No alias 60s ribosomal protein l10-3 0.02 Orthogroups_2024-Update
Pp1s347_24V6 No alias 60s ribosomal protein l10-3 0.03 Orthogroups_2024-Update
Pp1s447_11V6 No alias 60s ribosomal protein l10-3 0.02 Orthogroups_2024-Update
Sobic.001G177800.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.004G103700.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Solyc06g082650 No alias 60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME) 0.06 Orthogroups_2024-Update
Solyc06g082670 No alias 60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME) 0.05 Orthogroups_2024-Update
Sopen06g002430 No alias Ribosomal protein L16p/L10e 0.02 Orthogroups_2024-Update
Sopen06g034040 No alias Ribosomal protein L16p/L10e 0.03 Orthogroups_2024-Update
Sopen06g034060 No alias Ribosomal protein L16p/L10e 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
CC GO:0009317 acetyl-CoA carboxylase complex IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 13 166
No external refs found!