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  5. Brara.B02609.1

Brara.B02609.1


Description : RNA splicing factor *(SR30/34)


Gene families : OG_42_0001203 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001203_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B02609.1
Cluster HCAA Clusters: Cluster_319

Target Alias Description ECC score Gene Family Method Actions
Brara.F02064.1 No alias RNA splicing factor *(SR30/34) 0.06 Orthogroups_2024-Update
Brara.I00155.1 No alias RNA splicing factor *(SR30/34) 0.03 Orthogroups_2024-Update
Pp1s28_193V6 No alias pre-mrna-splicing factor sf2 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
MF GO:0009029 tetraacyldisaccharide 4'-kinase activity IEP Predicted GO
BP GO:0009245 lipid A biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046493 lipid A metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901269 lipooligosaccharide metabolic process IEP Predicted GO
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 76
IPR000504 RRM_dom 115 176
No external refs found!