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  5. Brara.C00416.1

Brara.C00416.1


Description : histone *(H3)


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00416.1
Cluster HCAA Clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
438193 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
A4A49_56508 No alias histone h3.2 0.03 Orthogroups_2024-Update
A4A49_57080 No alias histone h3.2 0.03 Orthogroups_2024-Update
A4A49_61103 No alias histone h3.2 0.03 Orthogroups_2024-Update
At1g09200 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.03 Orthogroups_2024-Update
At5g10390 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.03 Orthogroups_2024-Update
At5g10400 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.03 Orthogroups_2024-Update
At5g65360 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.04 Orthogroups_2024-Update
Cre06.g264650 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g265250 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g267950 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g274000 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g274850 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g276600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g276850 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g504650 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504800 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g505500 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g506300 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g506500 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre13.g569950 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre16.g661450 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g708150 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g708700 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre17.g709050 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G078314 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G130079 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G171387 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G179005 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G418258 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G188600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G188700 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G202500 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G227400 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G130900 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.12G055200 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.13G173100 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G342000 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.15G032300 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.15G222200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G266200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G073150.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU6Hr1G031580.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU7Hr1G012820.2 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU7Hr1G033030.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Kfl00053_0050 kfl00053_0050_v1.1 (p08437|h3_volca : 147.0) Histone H3 - Volvox carteri &... 0.02 Orthogroups_2024-Update
Kfl00240_g18 kfl00240_g18_v1.1 (at5g10980 : 254.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
MA_222556g0010 No alias (at5g65360 : 149.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
MA_24261g0010 No alias (at5g10980 : 255.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
MA_561217g0010 No alias (at5g65360 : 228.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
MA_56411g0010 No alias (at5g65360 : 262.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
MA_74555g0010 No alias (at5g65360 : 127.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
Mp7g10730.1 No alias histone (H3) 0.04 Orthogroups_2024-Update
Mp7g16200.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
Mp7g18030.1 No alias histone (H3) 0.04 Orthogroups_2024-Update
PSME_00018267-RA No alias (at5g10980 : 223.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.001G016700 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G028800 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Potri.T159501 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Pp1s12_93V6 No alias histone h3 0.02 Orthogroups_2024-Update
Pp1s3_594V6 No alias histone h3 0.03 Orthogroups_2024-Update
Seita.3G227400.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Seita.4G066000.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Solyc01g074000 No alias Histone H3 (AHRD V3.3 *** A0A0E0P928_ORYRU) 0.04 Orthogroups_2024-Update
Solyc01g079110 No alias Histone H3 (AHRD V3.3 *** A0A0V0H170_SOLCH) 0.05 Orthogroups_2024-Update
Solyc01g080600 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.04 Orthogroups_2024-Update
Solyc01g086820 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.04 Orthogroups_2024-Update
Solyc02g077480 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.06 Orthogroups_2024-Update
Solyc04g074580 No alias Histone H3 (AHRD V3.3 *** K7VSQ3_MAIZE) 0.04 Orthogroups_2024-Update
Solyc05g051500 No alias WEB family protein, chloroplastic (AHRD V3.3 *-*... 0.03 Orthogroups_2024-Update
Solyc10g008910 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.06 Orthogroups_2024-Update
Solyc12g056540 No alias Histone H3 (AHRD V3.3 *** K4DFY5_SOLLC) 0.06 Orthogroups_2024-Update
Sopen01g030620 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen01g030790 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen01g032420 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen01g033540 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen01g033560 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen01g033790 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen01g033830 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen02g022390 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen10g004700 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen12g029140 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
evm.model.contig_2255.2 No alias (at5g10980 : 218.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
BP GO:0000724 double-strand break repair via homologous recombination IEP Predicted GO
BP GO:0000725 recombinational repair IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004109 coproporphyrinogen oxidase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006417 regulation of translation IEP Predicted GO
BP GO:0006448 regulation of translational elongation IEP Predicted GO
BP GO:0006449 regulation of translational termination IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
BP GO:0006754 ATP biosynthetic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008837 diaminopimelate epimerase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009141 nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Predicted GO
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Predicted GO
BP GO:0009150 purine ribonucleotide metabolic process IEP Predicted GO
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Predicted GO
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Predicted GO
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Predicted GO
BP GO:0009259 ribonucleotide metabolic process IEP Predicted GO
BP GO:0009260 ribonucleotide biosynthetic process IEP Predicted GO
BP GO:0009891 positive regulation of biosynthetic process IEP Predicted GO
BP GO:0009893 positive regulation of metabolic process IEP Predicted GO
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010608 posttranscriptional regulation of gene expression IEP Predicted GO
BP GO:0010628 positive regulation of gene expression IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0031325 positive regulation of cellular metabolic process IEP Predicted GO
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0034248 regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043243 positive regulation of protein complex disassembly IEP Predicted GO
BP GO:0043244 regulation of protein complex disassembly IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
BP GO:0045727 positive regulation of translation IEP Predicted GO
BP GO:0045901 positive regulation of translational elongation IEP Predicted GO
BP GO:0045905 positive regulation of translational termination IEP Predicted GO
BP GO:0046034 ATP metabolic process IEP Predicted GO
BP GO:0046390 ribose phosphate biosynthetic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
MF GO:0047661 amino-acid racemase activity IEP Predicted GO
BP GO:0048522 positive regulation of cellular process IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051130 positive regulation of cellular component organization IEP Predicted GO
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051247 positive regulation of protein metabolic process IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1902600 proton transmembrane transport IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!