1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.C00487.1

Brara.C00487.1


Description : group-III RNA polymerase-II phosphatase & subcluster B phosphatase


Gene families : OG_42_0002681 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002681_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00487.1
Cluster HCAA Clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
At4g18140 No alias SCP1-like small phosphatase 4b... 0.03 Orthogroups_2024-Update
At5g46410 No alias SCP1-like small phosphatase 4... 0.04 Orthogroups_2024-Update
Glyma.09G088300 No alias SCP1-like small phosphatase 4 0.03 Orthogroups_2024-Update
Glyma.15G196400 No alias SCP1-like small phosphatase 4 0.04 Orthogroups_2024-Update
Mp7g00820.1 No alias RNA polymerase-II phosphatase. subcluster B phosphatase 0.02 Orthogroups_2024-Update
Potri.011G078300 No alias SCP1-like small phosphatase 4 0.04 Orthogroups_2024-Update
Seita.5G235500.1 No alias subcluster B phosphatase & group-III RNA polymerase-II... 0.04 Orthogroups_2024-Update
Sobic.003G229300.1 No alias subcluster B phosphatase & group-III RNA polymerase-II... 0.03 Orthogroups_2024-Update
Sopen02g020310 No alias NLI interacting factor-like phosphatase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004274 FCP1_dom 122 282
No external refs found!