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  5. Brara.C00633.1

Brara.C00633.1


Description : phosphorolytic exoribonuclease *(PNP) & EC_2.7 transferase transferring phosphorus-containing group


Gene families : OG_42_0002046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00633.1
Cluster HCAA Clusters: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
84724 No alias polyribonucleotide nucleotidyltransferase, putative 0.02 Orthogroups_2024-Update
LOC_Os02g40460 No alias S1 RNA binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
Mp7g12350.1 No alias polynucleotide phosphorylase (PNP) 0.02 Orthogroups_2024-Update
Potri.001G347900 No alias polyribonucleotide nucleotidyltransferase, putative 0.04 Orthogroups_2024-Update
Potri.013G065700 No alias polyribonucleotide nucleotidyltransferase, putative 0.03 Orthogroups_2024-Update
Pp1s336_43V6 No alias polyribonucleotide nucleotidyltransferase 0.03 Orthogroups_2024-Update
Seita.1G235700.1 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.06 Orthogroups_2024-Update
Sobic.004G215900.1 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
BP GO:0006396 RNA processing IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030686 90S preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0042575 DNA polymerase complex IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
CC GO:0043625 delta DNA polymerase complex IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 194 256
IPR015848 PNPase_PH_RNA-bd_bac/org-type 290 369
IPR003029 S1_domain 677 746
IPR001247 ExoRNase_PH_dom1 64 191
IPR001247 ExoRNase_PH_dom1 372 505
No external refs found!