Brara.C02094.1


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C02094.1
Cluster HCAA Clusters: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
Bradi1g35540 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Bradi1g46110 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g37800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.A02841.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.B00623.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C00964.1 No alias signal transducer of abscisic acid perception *(AIP2) 0.03 Orthogroups_2024-Update
Brara.C03763.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Brara.G02768.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G164358 No alias RING-H2 finger C1A 0.03 Orthogroups_2024-Update
Glyma.20G149700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G051760.1 No alias Unknown function 0.08 Orthogroups_2024-Update
LOC_Os02g09820 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.05 Orthogroups_2024-Update
LOC_Os08g38060 No alias RING finger protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_110029g0010 No alias (at1g55530 : 173.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_474338g0010 No alias (at2g39720 : 83.2) Encodes a putative RING-H2 finger... 0.04 Orthogroups_2024-Update
PSME_00056956-RA No alias (at2g40830 : 186.0) Encodes a putative RING-H2 finger... 0.03 Orthogroups_2024-Update
Potri.012G065300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G181600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.4G208100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.7G303700.1 No alias gibberellin modification enzyme *(ELA) & EC_1.14... 0.03 Orthogroups_2024-Update
Seita.8G172700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G176300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G386000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G165900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc12g008480 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT1G60360.1) 0.03 Orthogroups_2024-Update
Sopen05g014700 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen07g026890 No alias Ring finger domain 0.03 Orthogroups_2024-Update
evm.model.contig_4448.17 No alias (at3g19950 : 129.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 180 222
IPR039525 RNF126-like_zinc-ribbon 6 36
No external refs found!