Description : component *(eL38) of large ribosomal-subunit (LSU) proteome
Gene families : OG_42_0001927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001927_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.C02203.1 | |
Cluster | HCAA Clusters: Cluster_8 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
270247 | No alias | Ribosomal L38e protein family | 0.1 | Orthogroups_2024-Update | |
A4A49_59471 | No alias | 60s ribosomal protein l38 | 0.09 | Orthogroups_2024-Update | |
AC190609.3_FG002 | No alias | Ribosomal L38e protein family | 0.06 | Orthogroups_2024-Update | |
At3g59540 | No alias | 60S ribosomal protein L38... | 0.03 | Orthogroups_2024-Update | |
Bradi1g25302 | No alias | Ribosomal L38e protein family | 0.05 | Orthogroups_2024-Update | |
Bradi3g41837 | No alias | Ribosomal L38e protein family | 0.03 | Orthogroups_2024-Update | |
Brara.I04090.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
Cre07.g325746 | No alias | Ribosomal L38e protein family | 0.08 | Orthogroups_2024-Update | |
Glyma.08G100000 | No alias | Ribosomal L38e protein family | 0.12 | Orthogroups_2024-Update | |
HORVU2Hr1G043220.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
Kfl00433_0040 | kfl00433_0040_v1.1 | (at3g59540 : 122.0) Ribosomal L38e protein family;... | 0.03 | Orthogroups_2024-Update | |
LOC_Os11g24610 | No alias | 60S ribosomal protein L38, putative, expressed | 0.05 | Orthogroups_2024-Update | |
MA_20588g0010 | No alias | (at3g59540 : 129.0) Ribosomal L38e protein family;... | 0.08 | Orthogroups_2024-Update | |
PSME_00035421-RA | No alias | (at3g59540 : 127.0) Ribosomal L38e protein family;... | 0.11 | Orthogroups_2024-Update | |
Potri.007G131800 | No alias | Ribosomal L38e protein family | 0.08 | Orthogroups_2024-Update | |
Potri.010G181200 | No alias | Ribosomal L38e protein family | 0.06 | Orthogroups_2024-Update | |
Potri.017G020000 | No alias | Ribosomal L38e protein family | 0.05 | Orthogroups_2024-Update | |
Pp1s227_122V6 | No alias | 60s ribosomal protein l38 | 0.12 | Orthogroups_2024-Update | |
Pp1s288_10V6 | No alias | 60s ribosomal protein l38 | 0.13 | Orthogroups_2024-Update | |
Pp1s67_172V6 | No alias | 60s ribosomal protein l38 | 0.11 | Orthogroups_2024-Update | |
Seita.2G274700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Seita.2G333600.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
Seita.2G344700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
Seita.6G231700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
Sobic.002G331300.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Sobic.007G184600.2 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.11 | Orthogroups_2024-Update | |
Solyc05g055640 | No alias | ARM repeat superfamily protein (AHRD V3.3 --* AT1G12930.1) | 0.06 | Orthogroups_2024-Update | |
Solyc11g008510 | No alias | 60S ribosomal protein L38 (AHRD V3.3 *** RL38_SOLLC) | 0.12 | Orthogroups_2024-Update | |
Sopen05g034080 | No alias | Ribosomal L38e protein family | 0.06 | Orthogroups_2024-Update | |
Sopen11g004300 | No alias | Ribosomal L38e protein family | 0.13 | Orthogroups_2024-Update | |
evm.model.tig00021719.6 | No alias | (at3g59540 : 110.0) Ribosomal L38e protein family;... | 0.11 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | 16Dec |
CC | GO:0005840 | ribosome | IEA | 16Dec |
BP | GO:0006412 | translation | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000062 | fatty-acyl-CoA binding | IEP | Predicted GO |
BP | GO:0000105 | histidine biosynthetic process | IEP | Predicted GO |
MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
MF | GO:0004635 | phosphoribosyl-AMP cyclohydrolase activity | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006547 | histidine metabolic process | IEP | Predicted GO |
BP | GO:0006606 | protein import into nucleus | IEP | Predicted GO |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | Predicted GO |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
CC | GO:0016272 | prefoldin complex | IEP | Predicted GO |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Predicted GO |
BP | GO:0017038 | protein import | IEP | Predicted GO |
MF | GO:0019238 | cyclohydrolase activity | IEP | Predicted GO |
BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
BP | GO:0034504 | protein localization to nucleus | IEP | Predicted GO |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
BP | GO:0051169 | nuclear transport | IEP | Predicted GO |
BP | GO:0051170 | import into nucleus | IEP | Predicted GO |
BP | GO:0052803 | imidazole-containing compound metabolic process | IEP | Predicted GO |
MF | GO:0061608 | nuclear import signal receptor activity | IEP | Predicted GO |
BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
MF | GO:0140104 | molecular carrier activity | IEP | Predicted GO |
MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Predicted GO |
MF | GO:1901567 | fatty acid derivative binding | IEP | Predicted GO |
MF | GO:1901681 | sulfur compound binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002675 | Ribosomal_L38e | 2 | 68 |
No external refs found! |