Brara.C03109.1

Description : component *(eL22) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001702 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001702_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.C03109.1
Cluster	HCAA Clusters: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
270704	No alias	Ribosomal L22e protein family	0.15	Orthogroups_2024-Update
A4A49_00389	No alias	60s ribosomal protein l22-2	0.1	Orthogroups_2024-Update
At3g05560	No alias	60S ribosomal protein L22-2...	0.11	Orthogroups_2024-Update
Bradi1g18010	No alias	Ribosomal L22e protein family	0.03	Orthogroups_2024-Update
Bradi1g62830	No alias	Ribosomal L22e protein family	0.06	Orthogroups_2024-Update
Brara.A03699.1	No alias	component *(eL22) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.E03358.1	No alias	component *(eL22) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Brara.F02844.1	No alias	component *(eL22) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Cre07.g357850	No alias	Ribosomal L22e protein family	0.23	Orthogroups_2024-Update
GRMZM2G063617	No alias	Ribosomal L22e protein family	0.08	Orthogroups_2024-Update
GRMZM2G134107	No alias	Ribosomal L22e protein family	0.04	Orthogroups_2024-Update
Glyma.02G017800	No alias	Ribosomal L22e protein family	0.09	Orthogroups_2024-Update
Glyma.03G235000	No alias	Ribosomal L22e protein family	0.04	Orthogroups_2024-Update
Glyma.10G018200	No alias	Ribosomal L22e protein family	0.07	Orthogroups_2024-Update
Glyma.19G232700	No alias	Ribosomal L22e protein family	0.09	Orthogroups_2024-Update
Glyma.20G237000	No alias	Ribosomal L22e protein family	0.04	Orthogroups_2024-Update
HORVU2Hr1G019160.1	No alias	component *(eL22) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
HORVU7Hr1G080630.1	No alias	component *(eL22) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Kfl00104_0130	kfl00104_0130_v1.1	(at5g27770 : 144.0) Ribosomal L22e protein family;...	0.1	Orthogroups_2024-Update
LOC_Os03g22340	No alias	60S ribosomal protein L22-2, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os07g47710	No alias	60S ribosomal protein L22-2, putative, expressed	0.05	Orthogroups_2024-Update
PSME_00024504-RA	No alias	(at3g05560 : 145.0) Ribosomal L22e protein family;...	0.1	Orthogroups_2024-Update
Potri.005G024400	No alias	Ribosomal L22e protein family	0.04	Orthogroups_2024-Update
Potri.010G012700	No alias	Ribosomal L22e protein family	0.13	Orthogroups_2024-Update
Potri.013G015300	No alias	Ribosomal L22e protein family	0.07	Orthogroups_2024-Update
Potri.014G128800	No alias	Ribosomal L22e protein family	0.09	Orthogroups_2024-Update
Pp1s283_20V6	No alias	60s ribosomal protein	0.19	Orthogroups_2024-Update
Pp1s39_76V6	No alias	60s ribosomal protein	0.04	Orthogroups_2024-Update
Pp1s457_15V6	No alias	60s ribosomal protein	0.15	Orthogroups_2024-Update
Seita.2G429500.1	No alias	component *(eL22) of large ribosomal-subunit (LSU) proteome	0.22	Orthogroups_2024-Update
Seita.9G409100.1	No alias	component *(eL22) of large ribosomal-subunit (LSU) proteome	0.26	Orthogroups_2024-Update
Sobic.001G376600.1	No alias	component *(eL22) of large ribosomal-subunit (LSU) proteome	0.18	Orthogroups_2024-Update
Sobic.002G414700.1	No alias	component *(eL22) of large ribosomal-subunit (LSU) proteome	0.23	Orthogroups_2024-Update
Solyc01g099830	No alias	60S ribosomal protein L22-2 (AHRD V3.3 *** W9QTY3_9ROSA)	0.23	Orthogroups_2024-Update
Solyc09g075150	No alias	60S ribosomal protein L22-2 (AHRD V3.3 *** RL222_ARATH)	0.17	Orthogroups_2024-Update
Solyc09g075160	No alias	60S ribosomal protein L22-2 (AHRD V3.3 *** RL222_ARATH)	0.07	Orthogroups_2024-Update
Sopen01g043340	No alias	Ribosomal L22e protein family	0.23	Orthogroups_2024-Update
Sopen09g029970	No alias	Ribosomal L22e protein family	0.09	Orthogroups_2024-Update
Sopen09g029980	No alias	Ribosomal L22e protein family	0.14	Orthogroups_2024-Update
evm.model.contig_2121.19	No alias	(at3g05560 : 87.0) Ribosomal L22e protein family;...	0.16	Orthogroups_2024-Update
evm.model.tig00001206.7	No alias	(at3g05560 : 112.0) Ribosomal L22e protein family;...	0.13	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Predicted GO
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Predicted GO
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	Predicted GO
MF	GO:0004527	exonuclease activity	IEP	Predicted GO
MF	GO:0004635	phosphoribosyl-AMP cyclohydrolase activity	IEP	Predicted GO
BP	GO:0006361	transcription initiation from RNA polymerase I promoter	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006547	histidine metabolic process	IEP	Predicted GO
BP	GO:0006606	protein import into nucleus	IEP	Predicted GO
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predicted GO
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
CC	GO:0016272	prefoldin complex	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
BP	GO:0017038	protein import	IEP	Predicted GO
MF	GO:0019238	cyclohydrolase activity	IEP	Predicted GO
MF	GO:0034061	DNA polymerase activity	IEP	Predicted GO
BP	GO:0034504	protein localization to nucleus	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
BP	GO:0051169	nuclear transport	IEP	Predicted GO
BP	GO:0051170	import into nucleus	IEP	Predicted GO
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Predicted GO
MF	GO:0061608	nuclear import signal receptor activity	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
MF	GO:0140104	molecular carrier activity	IEP	Predicted GO
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Predicted GO
MF	GO:0140223	general transcription initiation factor activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002671	Ribosomal_L22e	14	122

External Links

No external refs found!

Brara.C03109.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation