Brara.D00278.1

Description : subgroup ERF-IV/DREB2 transcription factor

Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.D00278.1
Cluster	HCAA Clusters: Cluster_156

Target	Alias	Description	ECC score	Gene Family Method
A4A49_39586	No alias	ethylene-responsive transcription factor erf106	0.02	Orthogroups_2024-Update
At4g18450	No alias	Ethylene-responsive transcription factor ERF091...	0.07	Orthogroups_2024-Update
At5g05410	No alias	Dehydration-responsive element-binding protein 2A...	0.03	Orthogroups_2024-Update
Bradi4g31040	No alias	related to AP2 2	0.03	Orthogroups_2024-Update
Bradi5g24110	No alias	related to AP2 10	0.02	Orthogroups_2024-Update
Brara.G01019.1	No alias	transcription factor *(CRF) & subgroup ERF-VI...	0.03	Orthogroups_2024-Update
Brara.G02253.1	No alias	subgroup ERF-II transcription factor *(ERF16/17/18)	0.03	Orthogroups_2024-Update
GRMZM2G018398	No alias	related to AP2 12	0.02	Orthogroups_2024-Update
Glyma.05G186700	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.08G137600	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
HORVU6Hr1G060140.1	No alias	subgroup ERF-I transcription factor	0.03	Orthogroups_2024-Update
HORVU6Hr1G074970.1	No alias	subgroup ERF-I transcription factor	0.02	Orthogroups_2024-Update
HORVU7Hr1G026940.1	No alias	subgroup ERF-II-DEAR transcription factor	0.03	Orthogroups_2024-Update
LOC_Os05g37640	No alias	expressed protein	0.02	Orthogroups_2024-Update
PSME_00004812-RA	No alias	(at4g23750 : 92.4) encodes a member of the ERF (ethylene...	0.02	Orthogroups_2024-Update
Potri.013G158500	No alias	cytokinin response factor 4	0.03	Orthogroups_2024-Update
Pp1s124_33V6	No alias	ap2 erf domain-containing transcription factor	0.02	Orthogroups_2024-Update
Pp1s162_92V6	No alias	ap2 erf domain-containing transcription factor	0.03	Orthogroups_2024-Update
Sobic.001G039800.1	No alias	transcription factor *(CRF) & subgroup ERF-VI...	0.03	Orthogroups_2024-Update
Sobic.004G319700.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sopen06g033990	No alias	AP2 domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003729	mRNA binding	IEP	Predicted GO
MF	GO:0003916	DNA topoisomerase activity	IEP	Predicted GO
MF	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	IEP	Predicted GO
CC	GO:0005849	mRNA cleavage factor complex	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006265	DNA topological change	IEP	Predicted GO
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Predicted GO
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0006378	mRNA polyadenylation	IEP	Predicted GO
BP	GO:0006397	mRNA processing	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006820	anion transport	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
MF	GO:0008094	DNA-dependent ATPase activity	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016071	mRNA metabolic process	IEP	Predicted GO
MF	GO:0016409	palmitoyltransferase activity	IEP	Predicted GO
BP	GO:0031123	RNA 3'-end processing	IEP	Predicted GO
BP	GO:0031124	mRNA 3'-end processing	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
BP	GO:0043631	RNA polyadenylation	IEP	Predicted GO
CC	GO:0044451	nucleoplasm part	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0051020	GTPase binding	IEP	Predicted GO
MF	GO:0061505	DNA topoisomerase II activity	IEP	Predicted GO
BP	GO:0071103	DNA conformation change	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	26	77

External Links

No external refs found!

Brara.D00278.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation