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  5. Brara.D01744.1

Brara.D01744.1


Description : ligand-gated cation channel *(GLR)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D01744.1
Cluster HCAA Clusters: Cluster_371

Target Alias Description ECC score Gene Family Method Actions
At2g29110 No alias Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:A0A1P8B074] 0.04 Orthogroups_2024-Update
Brara.D01493.1 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
Glyma.13G233300 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Potri.006G268700 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
Potri.018G096300 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0019786 Atg8-specific protease activity IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
InterPro domains Description Start Stop
IPR001320 Iontro_rcpt 682 715
IPR001638 Solute-binding_3/MltF_N 354 681
IPR001828 ANF_lig-bd_rcpt 2 272
No external refs found!