1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.D01828.1

Brara.D01828.1


Description : component *(PsbW) of PS-II complex


Gene families : OG_42_0003970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003970_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D01828.1
Cluster HCAA Clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
A4A49_05181 No alias photosystem ii reaction center w protein, chloroplastic 0.11 Orthogroups_2024-Update
A4A49_19163 No alias photosystem ii reaction center w protein, chloroplastic 0.05 Orthogroups_2024-Update
At2g30570 No alias PSBW [Source:UniProtKB/TrEMBL;Acc:A0A178VQ32] 0.05 Orthogroups_2024-Update
Bradi2g20380 No alias photosystem II reaction center W 0.06 Orthogroups_2024-Update
Glyma.02G141700 No alias photosystem II reaction center W 0.15 Orthogroups_2024-Update
Glyma.03G159100 No alias photosystem II reaction center W 0.09 Orthogroups_2024-Update
Glyma.10G032200 No alias photosystem II reaction center W 0.07 Orthogroups_2024-Update
Glyma.19G161400 No alias photosystem II reaction center W 0.07 Orthogroups_2024-Update
HORVU1Hr1G078140.4 No alias component *(PsbW) of PS-II complex 0.05 Orthogroups_2024-Update
HORVU3Hr1G075870.1 No alias component *(PsbW) of PS-II complex 0.04 Orthogroups_2024-Update
Kfl00638_0030 kfl00638_0030_v1.1 no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
LOC_Os01g56680 No alias photosystem II reaction center W protein, chloroplast... 0.04 Orthogroups_2024-Update
LOC_Os05g43310 No alias photosystem II reaction center W protein, chloroplast... 0.04 Orthogroups_2024-Update
Mp5g14190.1 No alias component PsbW of PS-II complex 0.12 Orthogroups_2024-Update
PSME_00010732-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.002G044300 No alias photosystem II reaction center W 0.04 Orthogroups_2024-Update
Pp1s185_110V6 No alias photosystem ii reaction center w chloroplast 0.17 Orthogroups_2024-Update
Pp1s185_111V6 No alias photosystem ii reaction center w chloroplast 0.07 Orthogroups_2024-Update
Seita.3G184900.1 No alias component *(PsbW) of PS-II complex 0.09 Orthogroups_2024-Update
Seita.5G336700.1 No alias component *(PsbW) of PS-II complex 0.11 Orthogroups_2024-Update
Sobic.003G313000.1 No alias component *(PsbW) of PS-II complex 0.1 Orthogroups_2024-Update
Sobic.009G191300.1 No alias component *(PsbW) of PS-II complex 0.06 Orthogroups_2024-Update
Solyc06g084050 No alias LOW QUALITY:isochorismate synthase 2 (AHRD V3.3 --* AT1G18870.2) 0.07 Orthogroups_2024-Update
Solyc09g065910 No alias photosystem II reaction center W (AHRD V3.3 *** AT2G30570.1) 0.1 Orthogroups_2024-Update
Sopen06g035440 No alias Photosystem II reaction centre W protein (PsbW) 0.1 Orthogroups_2024-Update
Sopen09g027700 No alias Photosystem II reaction centre W protein (PsbW) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEA 16Dec
CC GO:0009523 photosystem II IEA 16Dec
BP GO:0015979 photosynthesis IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004359 glutaminase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
MF GO:0010242 oxygen evolving activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0042816 vitamin B6 metabolic process IEP Predicted GO
BP GO:0042819 vitamin B6 biosynthetic process IEP Predicted GO
BP GO:0042822 pyridoxal phosphate metabolic process IEP Predicted GO
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
BP GO:0046184 aldehyde biosynthetic process IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR009806 PSII_PsbW_class2 1 133
No external refs found!