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  5. Brara.D02456.1

Brara.D02456.1


Description : pre-60S ribosomal subunit assembly factor *(SMO4)


Gene families : OG_42_0007205 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007205_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Brassica rapa: Brara.D02456.1
Cluster HCAA Clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
At2g40430 No alias CONTAINS InterPro DOMAIN/s: P60-like... 0.03 Orthogroups_2024-Update
Bradi2g36460 No alias Function unknown 0.05 Orthogroups_2024-Update
Cre07.g348250 No alias Function unknown 0.08 Orthogroups_2024-Update
Glyma.02G230100 No alias Function unknown 0.04 Orthogroups_2024-Update
Mp1g17930.1 No alias pre-60S ribosomal subunit assembly factor (SMO4) 0.02 Orthogroups_2024-Update
Seita.3G058800.1 No alias pre-60S ribosomal subunit assembly factor *(SMO4) 0.06 Orthogroups_2024-Update
Sobic.009G040500.1 No alias pre-60S ribosomal subunit assembly factor *(SMO4) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
InterPro domains Description Start Stop
IPR011687 Nop53/GLTSCR2 8 366
No external refs found!