Description : component *(uL30) of large ribosomal-subunit (LSU) proteome
Gene families : OG_42_0001114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001114_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.D02679.1 | |
Cluster | HCAA Clusters: Cluster_8 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
103994 | No alias | Ribosomal protein L30/L7 family protein | 0.15 | Orthogroups_2024-Update | |
A4A49_32887 | No alias | 60s ribosomal protein l7-1 | 0.05 | Orthogroups_2024-Update | |
At3g13580 | No alias | Ribosomal protein L30/L7 family protein... | 0.06 | Orthogroups_2024-Update | |
Bradi1g04950 | No alias | Ribosomal protein L30/L7 family protein | 0.21 | Orthogroups_2024-Update | |
Bradi3g41850 | No alias | Ribosomal protein L30/L7 family protein | 0.01 | Orthogroups_2024-Update | |
Bradi5g20900 | No alias | Ribosomal protein L30/L7 family protein | 0.21 | Orthogroups_2024-Update | |
Brara.B02397.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Brara.B03026.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.17 | Orthogroups_2024-Update | |
Brara.F03496.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.22 | Orthogroups_2024-Update | |
Brara.G02051.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
Brara.I02011.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.22 | Orthogroups_2024-Update | |
Cre12.g537800 | No alias | Ribosomal protein L30/L7 family protein | 0.15 | Orthogroups_2024-Update | |
GRMZM2G100225 | No alias | Ribosomal protein L30/L7 family protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G107336 | No alias | Ribosomal protein L30/L7 family protein | 0.03 | Orthogroups_2024-Update | |
GRMZM5G868433 | No alias | Ribosomal protein L30/L7 family protein | 0.13 | Orthogroups_2024-Update | |
Glyma.07G020000 | No alias | Ribosomal protein L30/L7 family protein | 0.07 | Orthogroups_2024-Update | |
Glyma.08G222100 | No alias | Ribosomal protein L30/L7 family protein | 0.11 | Orthogroups_2024-Update | |
Glyma.09G061000 | No alias | Ribosomal protein L30/L7 family protein | 0.06 | Orthogroups_2024-Update | |
Glyma.15G167400 | No alias | Ribosomal protein L30/L7 family protein | 0.11 | Orthogroups_2024-Update | |
HORVU2Hr1G100970.4 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
HORVU5Hr1G108990.2 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.13 | Orthogroups_2024-Update | |
Kfl00380_0050 | kfl00380_0050_v1.1 | (at2g01250 : 349.0) Ribosomal protein L30/L7 family... | 0.07 | Orthogroups_2024-Update | |
LOC_Os04g51630 | No alias | 60S ribosomal protein L7, putative, expressed | 0.04 | Orthogroups_2024-Update | |
LOC_Os08g13690 | No alias | 60S ribosomal protein L7, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_109845g0010 | No alias | (at2g01250 : 278.0) Ribosomal protein L30/L7 family... | 0.11 | Orthogroups_2024-Update | |
MA_47548g0010 | No alias | (at2g01250 : 324.0) Ribosomal protein L30/L7 family... | 0.11 | Orthogroups_2024-Update | |
Mp3g13040.1 | No alias | component RPL7 of LSU proteome component | 0.11 | Orthogroups_2024-Update | |
PSME_00002449-RA | No alias | (at2g01250 : 310.0) Ribosomal protein L30/L7 family... | 0.04 | Orthogroups_2024-Update | |
PSME_00040767-RA | No alias | (at2g01250 : 333.0) Ribosomal protein L30/L7 family... | 0.15 | Orthogroups_2024-Update | |
PSME_00042409-RA | No alias | (at2g01250 : 328.0) Ribosomal protein L30/L7 family... | 0.06 | Orthogroups_2024-Update | |
Potri.006G073200 | No alias | Ribosomal protein L30/L7 family protein | 0.11 | Orthogroups_2024-Update | |
Potri.008G008000 | No alias | Ribosomal protein L30/L7 family protein | 0.17 | Orthogroups_2024-Update | |
Potri.010G250900 | No alias | Ribosomal protein L30/L7 family protein | 0.12 | Orthogroups_2024-Update | |
Potri.018G140300 | No alias | Ribosomal protein L30/L7 family protein | 0.11 | Orthogroups_2024-Update | |
Pp1s11_173V6 | No alias | 60s ribosomal protein l7-1 | 0.04 | Orthogroups_2024-Update | |
Pp1s243_40V6 | No alias | 60s ribosomal protein l7-2 | 0.12 | Orthogroups_2024-Update | |
Pp1s7_369V6 | No alias | 60s ribosomal protein l7-2 | 0.14 | Orthogroups_2024-Update | |
Seita.1G117100.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Seita.6G017200.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.15 | Orthogroups_2024-Update | |
Seita.6G231500.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
Seita.7G228400.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.25 | Orthogroups_2024-Update | |
Sobic.007G085000.2 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Sobic.007G085001.1 | No alias | component *(uL30) of large ribosomal-subunit (LSU) proteome | 0.3 | Orthogroups_2024-Update | |
Solyc03g117060 | No alias | 60S ribosomal protein L7 (AHRD V3.3 *** B9GMC3_POPTR) | 0.07 | Orthogroups_2024-Update | |
Solyc06g068400 | No alias | 60S ribosomal protein L7 (AHRD V3.3 *** B9GMC3_POPTR) | 0.11 | Orthogroups_2024-Update | |
Solyc07g008370 | No alias | 60S ribosomal protein L7 (AHRD V3.3 *** A0A072VPV6_MEDTR) | 0.25 | Orthogroups_2024-Update | |
Solyc08g075090 | No alias | bHLH transcription factor144 | 0.23 | Orthogroups_2024-Update | |
Sopen07g004260 | No alias | Ribosomal L30 N-terminal domain | 0.24 | Orthogroups_2024-Update | |
Sopen08g023720 | No alias | Ribosomal L30 N-terminal domain | 0.16 | Orthogroups_2024-Update | |
Sopen12g032080 | No alias | Ribosomal L30 N-terminal domain | 0.26 | Orthogroups_2024-Update | |
evm.model.contig_2085.3 | No alias | (at3g13580 : 237.0) Ribosomal protein L30/L7 family... | 0.24 | Orthogroups_2024-Update | |
evm.model.tig00020909.42 | No alias | (at2g44120 : 205.0) Ribosomal protein L30/L7 family... | 0.2 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000105 | histidine biosynthetic process | IEP | Predicted GO |
CC | GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | IEP | Predicted GO |
MF | GO:0001181 | RNA polymerase I general transcription initiation factor activity | IEP | Predicted GO |
MF | GO:0003674 | molecular_function | IEP | Predicted GO |
MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
MF | GO:0004635 | phosphoribosyl-AMP cyclohydrolase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
CC | GO:0005575 | cellular_component | IEP | Predicted GO |
CC | GO:0005840 | ribosome | IEP | Predicted GO |
BP | GO:0006361 | transcription initiation from RNA polymerase I promoter | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006412 | translation | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006547 | histidine metabolic process | IEP | Predicted GO |
BP | GO:0006606 | protein import into nucleus | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
BP | GO:0008150 | biological_process | IEP | Predicted GO |
BP | GO:0008152 | metabolic process | IEP | Predicted GO |
BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
MF | GO:0019238 | cyclohydrolase activity | IEP | Predicted GO |
BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
BP | GO:0034504 | protein localization to nucleus | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
CC | GO:0035145 | exon-exon junction complex | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
CC | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0051170 | import into nucleus | IEP | Predicted GO |
BP | GO:0052803 | imidazole-containing compound metabolic process | IEP | Predicted GO |
MF | GO:0061608 | nuclear import signal receptor activity | IEP | Predicted GO |
BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
MF | GO:0140104 | molecular carrier activity | IEP | Predicted GO |
MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Predicted GO |
MF | GO:0140223 | general transcription initiation factor activity | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No external refs found! |