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  5. Brara.E00191.1

Brara.E00191.1


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Brassica rapa: Brara.E00191.1
Cluster HCAA Clusters: Cluster_317

Target Alias Description ECC score Gene Family Method Actions
Potri.006G032100 No alias RING-H2 finger C1A 0.04 Orthogroups_2024-Update
Potri.006G217600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.6G176300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
evm.model.contig_2210.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_2287.2 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
evm.model.contig_4448.17 No alias (at3g19950 : 129.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
CC GO:0005672 transcription factor TFIIA complex IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 185 227
IPR039525 RNF126-like_zinc-ribbon 6 37
No external refs found!