Brara.E00310.1

Description : MADS/AGL-type transcription factor

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.E00310.1
Cluster	HCAA Clusters: Cluster_103

Target	Alias	Description	ECC score	Gene Family Method
A4A49_14828	No alias	agamous-like mads-box protein agl104	0.03	Orthogroups_2024-Update
A4A49_18078	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
A4A49_22632	No alias	floral homeotic protein agamous	0.03	Orthogroups_2024-Update
At1g01530	No alias	AGL28 [Source:UniProtKB/TrEMBL;Acc:A0A178WE04]	0.04	Orthogroups_2024-Update
At1g77980	No alias	Agamous-like MADS-box protein AGL66...	0.04	Orthogroups_2024-Update
At2g24840	No alias	Agamous-like MADS-box protein AGL61...	0.04	Orthogroups_2024-Update
At4g22950	No alias	Agamous-like MADS-box protein AGL19...	0.03	Orthogroups_2024-Update
At5g23260	No alias	K-box region and MADS-box transcription factor family...	0.03	Orthogroups_2024-Update
At5g60910	No alias	Agamous-like MADS-box protein AGL8...	0.03	Orthogroups_2024-Update
Bradi1g69890	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Bradi2g30530	No alias	AGAMOUS-like 23	0.03	Orthogroups_2024-Update
Bradi2g43290	No alias	AGAMOUS-like 62	0.02	Orthogroups_2024-Update
Bradi4g34680	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Bradi4g39420	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Brara.C00694.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.04	Orthogroups_2024-Update
Brara.C04645.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.J00748.1	No alias	MADS/AGL-type transcription factor	0.05	Orthogroups_2024-Update
Brara.J00749.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
Brara.K00198.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
GRMZM2G129034	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Glyma.01G064100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.03G019300	No alias	AGAMOUS-like 20	0.03	Orthogroups_2024-Update
Glyma.05G163200	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Glyma.06G117600	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.08G282500	No alias	AGAMOUS-like 29	0.03	Orthogroups_2024-Update
Glyma.09G266400	No alias	AGAMOUS-like 6	0.04	Orthogroups_2024-Update
Glyma.14G027251	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.19G047600	No alias	MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.20G136700	No alias	AGAMOUS-like 62	0.04	Orthogroups_2024-Update
HORVU1Hr1G047550.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.02	Orthogroups_2024-Update
HORVU3Hr1G095090.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
HORVU6Hr1G002330.8	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os03g03070	No alias	transcription factor, putative, expressed	0.04	Orthogroups_2024-Update
PSME_00013164-RA	No alias	(at4g11880 : 108.0) AGL12, AGL14, and AGL17 are all...	0.03	Orthogroups_2024-Update
PSME_00017701-RA	No alias	(at4g16370 : 263.0) Encodes an oligopeptide transporter...	0.03	Orthogroups_2024-Update
Potri.004G002400	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Potri.T101400	No alias	AGAMOUS-like 62	0.04	Orthogroups_2024-Update
Pp1s8_101V6	No alias	mikc* mads-box transcription factor	0.03	Orthogroups_2024-Update
Seita.2G002300.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.02	Orthogroups_2024-Update
Seita.2G383000.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.03	Orthogroups_2024-Update
Seita.5G101300.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Seita.9G561000.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Solyc02g071730	No alias	Tomato AGAMOUS 1	0.04	Orthogroups_2024-Update
Solyc06g059970	No alias	TPI	0.03	Orthogroups_2024-Update
Solyc10g017630	No alias	MADS-box transcription factor (AHRD V3.3 *** Q1EMR8_PLAMJ)	0.03	Orthogroups_2024-Update
Sopen01g049040	No alias	SRF-type transcription factor (DNA-binding and...	0.03	Orthogroups_2024-Update
Sopen02g034000	No alias	K-box region	0.03	Orthogroups_2024-Update
Sopen06g020070	No alias	SRF-type transcription factor (DNA-binding and...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003997	acyl-CoA oxidase activity	IEP	Predicted GO
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	Predicted GO
CC	GO:0005777	peroxisome	IEP	Predicted GO
BP	GO:0006497	protein lipidation	IEP	Predicted GO
BP	GO:0006505	GPI anchor metabolic process	IEP	Predicted GO
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Predicted GO
BP	GO:0006629	lipid metabolic process	IEP	Predicted GO
BP	GO:0006635	fatty acid beta-oxidation	IEP	Predicted GO
BP	GO:0006643	membrane lipid metabolic process	IEP	Predicted GO
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Predicted GO
BP	GO:0006664	glycolipid metabolic process	IEP	Predicted GO
BP	GO:0008610	lipid biosynthetic process	IEP	Predicted GO
BP	GO:0009062	fatty acid catabolic process	IEP	Predicted GO
BP	GO:0009247	glycolipid biosynthetic process	IEP	Predicted GO
BP	GO:0016042	lipid catabolic process	IEP	Predicted GO
BP	GO:0016054	organic acid catabolic process	IEP	Predicted GO
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Predicted GO
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	Predicted GO
BP	GO:0019395	fatty acid oxidation	IEP	Predicted GO
BP	GO:0030258	lipid modification	IEP	Predicted GO
BP	GO:0034440	lipid oxidation	IEP	Predicted GO
CC	GO:0042579	microbody	IEP	Predicted GO
BP	GO:0044242	cellular lipid catabolic process	IEP	Predicted GO
BP	GO:0044255	cellular lipid metabolic process	IEP	Predicted GO
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Predicted GO
BP	GO:0046395	carboxylic acid catabolic process	IEP	Predicted GO
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Predicted GO
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Predicted GO
BP	GO:0046486	glycerolipid metabolic process	IEP	Predicted GO
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Predicted GO
BP	GO:1903509	liposaccharide metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	100	186
IPR002100	TF_MADSbox	25	72

External Links

No external refs found!

Brara.E00310.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation