Brara.E01277.1

Description : component *(PsbW) of PS-II complex

Gene families : OG_42_0003970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003970_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.E01277.1
Cluster	HCAA Clusters: Cluster_182

Target	Alias	Description	ECC score	Gene Family Method
A4A49_05181	No alias	photosystem ii reaction center w protein, chloroplastic	0.07	Orthogroups_2024-Update
A4A49_19163	No alias	photosystem ii reaction center w protein, chloroplastic	0.04	Orthogroups_2024-Update
Glyma.02G141700	No alias	photosystem II reaction center W	0.04	Orthogroups_2024-Update
Glyma.03G159100	No alias	photosystem II reaction center W	0.05	Orthogroups_2024-Update
Glyma.10G032200	No alias	photosystem II reaction center W	0.04	Orthogroups_2024-Update
Glyma.19G161400	No alias	photosystem II reaction center W	0.05	Orthogroups_2024-Update
HORVU1Hr1G078140.4	No alias	component *(PsbW) of PS-II complex	0.02	Orthogroups_2024-Update
Kfl00638_0030	kfl00638_0030_v1.1	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
Mp5g14190.1	No alias	component PsbW of PS-II complex	0.04	Orthogroups_2024-Update
Pp1s185_110V6	No alias	photosystem ii reaction center w chloroplast	0.07	Orthogroups_2024-Update
Seita.3G184900.1	No alias	component *(PsbW) of PS-II complex	0.05	Orthogroups_2024-Update
Seita.5G336700.1	No alias	component *(PsbW) of PS-II complex	0.06	Orthogroups_2024-Update
Sobic.003G313000.1	No alias	component *(PsbW) of PS-II complex	0.07	Orthogroups_2024-Update
Solyc06g084050	No alias	LOW QUALITY:isochorismate synthase 2 (AHRD V3.3 --* AT1G18870.2)	0.05	Orthogroups_2024-Update
Solyc09g065910	No alias	photosystem II reaction center W (AHRD V3.3 *** AT2G30570.1)	0.05	Orthogroups_2024-Update
Sopen06g035440	No alias	Photosystem II reaction centre W protein (PsbW)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IEA	16Dec
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009523	photosystem II	IEA	16Dec
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IEA	16Dec
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Predicted GO
MF	GO:0004252	serine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005384	manganese ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0006873	cellular ion homeostasis	IEP	Predicted GO
BP	GO:0006875	cellular metal ion homeostasis	IEP	Predicted GO
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	Predicted GO
CC	GO:0009522	photosystem I	IEP	Predicted GO
CC	GO:0009538	photosystem I reaction center	IEP	Predicted GO
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Predicted GO
BP	GO:0009719	response to endogenous stimulus	IEP	Predicted GO
BP	GO:0009725	response to hormone	IEP	Predicted GO
BP	GO:0009733	response to auxin	IEP	Predicted GO
BP	GO:0010033	response to organic substance	IEP	Predicted GO
MF	GO:0010309	acireductone dioxygenase [iron(II)-requiring] activity	IEP	Predicted GO
CC	GO:0016020	membrane	IEP	Predicted GO
BP	GO:0016485	protein processing	IEP	Predicted GO
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Predicted GO
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Predicted GO
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Predicted GO
BP	GO:0019725	cellular homeostasis	IEP	Predicted GO
CC	GO:0019898	extrinsic component of membrane	IEP	Predicted GO
BP	GO:0030003	cellular cation homeostasis	IEP	Predicted GO
BP	GO:0030026	cellular manganese ion homeostasis	IEP	Predicted GO
BP	GO:0042221	response to chemical	IEP	Predicted GO
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Predicted GO
BP	GO:0048878	chemical homeostasis	IEP	Predicted GO
BP	GO:0050801	ion homeostasis	IEP	Predicted GO
BP	GO:0050896	response to stimulus	IEP	Predicted GO
MF	GO:0051020	GTPase binding	IEP	Predicted GO
MF	GO:0051213	dioxygenase activity	IEP	Predicted GO
BP	GO:0051604	protein maturation	IEP	Predicted GO
BP	GO:0055065	metal ion homeostasis	IEP	Predicted GO
BP	GO:0055071	manganese ion homeostasis	IEP	Predicted GO
BP	GO:0055076	transition metal ion homeostasis	IEP	Predicted GO
BP	GO:0055080	cation homeostasis	IEP	Predicted GO
BP	GO:0055082	cellular chemical homeostasis	IEP	Predicted GO
BP	GO:0071586	CAAX-box protein processing	IEP	Predicted GO
BP	GO:0098771	inorganic ion homeostasis	IEP	Predicted GO
CC	GO:1990204	oxidoreductase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR009806	PSII_PsbW_class2	1	133

External Links

No external refs found!

Brara.E01277.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation