1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.E03078.1

Brara.E03078.1


Description : circadian clock factor *(REVEILLE) & transcription factor *(REVEILLE)


Gene families : OG_42_0000380 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000380_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E03078.1
Cluster HCAA Clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
78045 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_01132 No alias protein reveille 8 0.04 Orthogroups_2024-Update
A4A49_37597 No alias protein reveille 1 0.03 Orthogroups_2024-Update
At1g01520 No alias ASG4 [Source:UniProtKB/TrEMBL;Acc:A0A178W835] 0.05 Orthogroups_2024-Update
At2g46830 No alias Protein CCA1 [Source:UniProtKB/Swiss-Prot;Acc:P92973] 0.06 Orthogroups_2024-Update
At3g09600 No alias Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3] 0.09 Orthogroups_2024-Update
At5g02840 No alias LCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Z5] 0.04 Orthogroups_2024-Update
At5g17300 No alias Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6] 0.06 Orthogroups_2024-Update
At5g52660 No alias Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3] 0.03 Orthogroups_2024-Update
Bradi1g29680 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g51757 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.E01373.1 No alias transcription factor *(REVEILLE) 0.03 Orthogroups_2024-Update
Brara.F01290.1 No alias transcription factor *(REVEILLE) 0.04 Orthogroups_2024-Update
Brara.I00054.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
Glyma.16G217700 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU7Hr1G001830.3 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
Kfl00255_0190 kfl00255_0190_v1.... (at1g01060 : 122.0) LHY encodes a myb-related putative... 0.02 Orthogroups_2024-Update
LOC_Os02g46030 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g51260 No alias MYB family transcription factor, putative, expressed 0.04 Orthogroups_2024-Update
Mp2g14310.1 No alias transcription factor (MYB-related). REVEILLE circadian... 0.02 Orthogroups_2024-Update
PSME_00043429-RA No alias (at5g17300 : 121.0) Myb-like transcription factor that... 0.03 Orthogroups_2024-Update
Potri.006G133000 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.017G144800 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Pp1s198_135V6 No alias dna binding protein 0.04 Orthogroups_2024-Update
Pp1s46_272V6 No alias dna binding protein 0.03 Orthogroups_2024-Update
Sobic.004G279300.1 No alias transcription factor *(REVEILLE) 0.02 Orthogroups_2024-Update
Sobic.004G281800.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.06 Orthogroups_2024-Update
Sobic.010G004300.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.05 Orthogroups_2024-Update
Sobic.010G223700.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.01 Orthogroups_2024-Update
Solyc03g098320 No alias Myb transcription factor (AHRD V3.3 *** A0A072UBN0_MEDTR) 0.04 Orthogroups_2024-Update
Solyc10g084370 No alias MYB transcription factor (AHRD V3.3 *** B5TV64_CAMSI) 0.04 Orthogroups_2024-Update
Sopen03g029070 No alias Myb-like DNA-binding domain 0.04 Orthogroups_2024-Update
evm.model.contig_2210.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_3551.3 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0017007 protein-bilin linkage IEP Predicted GO
BP GO:0017009 protein-phycocyanobilin linkage IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 42 87
No external refs found!