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  5. Brara.E03281.1

Brara.E03281.1


Description : regulatory protein of RNA homeostasis


Gene families : OG_42_0000464 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E03281.1
Cluster HCAA Clusters: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
45667 No alias zinc finger nuclease 3 0.04 Orthogroups_2024-Update
A4A49_10593 No alias zinc finger ccch domain-containing protein zfn-like protein 0.02 Orthogroups_2024-Update
At5g16540 No alias Zinc finger CCCH domain-containing protein 57... 0.03 Orthogroups_2024-Update
Bradi4g08050 No alias zinc finger protein 1 0.03 Orthogroups_2024-Update
Brara.F01670.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Glyma.10G170800 No alias zinc finger protein 1 0.04 Orthogroups_2024-Update
Potri.019G053200 No alias zinc finger protein 1 0.03 Orthogroups_2024-Update
Solyc11g008900 No alias Zinc finger transcription factor 65 0.05 Orthogroups_2024-Update
Sopen06g019680 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.03 Orthogroups_2024-Update
Sopen11g004680 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006817 phosphate ion transport IEP Predicted GO
MF GO:0008883 glutamyl-tRNA reductase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 283 307
IPR000571 Znf_CCCH 329 354
IPR000571 Znf_CCCH 88 113
IPR000571 Znf_CCCH 39 64
IPR000571 Znf_CCCH 134 158
No external refs found!