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  5. Brara.E03287.1

Brara.E03287.1


Description : TUB-type transcription factor


Gene families : OG_42_0000271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E03287.1
Cluster HCAA Clusters: Cluster_279

Target Alias Description ECC score Gene Family Method Actions
A4A49_21800 No alias tubby-like f-box protein 5 0.03 Orthogroups_2024-Update
Glyma.14G073500 No alias tubby like protein 6 0.02 Orthogroups_2024-Update
LOC_Os02g47640 No alias OsFBT4 - F-box and tubby domain containing protein, expressed 0.02 Orthogroups_2024-Update
Seita.8G043600.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Solyc04g071440 No alias Tubby-like F-box protein (AHRD V3.3 *** K4BTD6_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 33 81
IPR000007 Tubby_C 95 348
No external refs found!