Brara.E03356.1

Description : mTERF-type transcription factor

Gene families : OG_42_0000078 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.E03356.1
Cluster	HCAA Clusters: Cluster_264

Target	Alias	Description	ECC score	Gene Family Method
At1g62150	No alias	Mitochondrial transcription termination factor family...	0.04	Orthogroups_2024-Update
Bradi4g23197	No alias	Mitochondrial transcription termination factor family protein	0.04	Orthogroups_2024-Update
Brara.I01477.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Glyma.08G275900	No alias	Mitochondrial transcription termination factor family protein	0.05	Orthogroups_2024-Update
HORVU2Hr1G024310.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
HORVU6Hr1G003570.23	No alias	mTERF-type transcription factor	0.04	Orthogroups_2024-Update
HORVU6Hr1G075340.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Mp3g14990.1	No alias	transcription factor (mTERF)	0.04	Orthogroups_2024-Update
Mp6g07740.1	No alias	transcription factor (mTERF)	0.02	Orthogroups_2024-Update
PSME_00000445-RA	No alias	(at5g64950 : 86.7) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
PSME_00006887-RA	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
PSME_00008734-RA	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
PSME_00008735-RA	No alias	(at1g79220 : 115.0) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
PSME_00019792-RA	No alias	(at1g79220 : 99.0) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
PSME_00056620-RA	No alias	(at1g79220 : 139.0) Mitochondrial transcription...	0.02	Orthogroups_2024-Update
Potri.014G133200	No alias	Mitochondrial transcription termination factor family protein	0.02	Orthogroups_2024-Update
Pp1s219_66V6	No alias	No description available	0.03	Orthogroups_2024-Update
Seita.3G247400.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.4G092000.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.4G094400.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.4G095000.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.4G095900.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.5G100700.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.001G034000.1	No alias	mTERF-type transcription factor	0.05	Orthogroups_2024-Update
Sobic.002G179800.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.003G199700.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
Solyc04g072550	No alias	Transcription termination factor, mitochondrial (AHRD...	0.03	Orthogroups_2024-Update
Sopen04g028700	No alias	mTERF	0.03	Orthogroups_2024-Update
evm.model.tig00001416.3	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Predicted GO
BP	GO:0001510	RNA methylation	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006766	vitamin metabolic process	IEP	Predicted GO
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Predicted GO
BP	GO:0006771	riboflavin metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
BP	GO:0008104	protein localization	IEP	Predicted GO
BP	GO:0008152	metabolic process	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008649	rRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	Predicted GO
BP	GO:0009110	vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0009231	riboflavin biosynthetic process	IEP	Predicted GO
BP	GO:0009987	cellular process	IEP	Predicted GO
BP	GO:0015031	protein transport	IEP	Predicted GO
BP	GO:0015833	peptide transport	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016435	rRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0030688	preribosome, small subunit precursor	IEP	Predicted GO
BP	GO:0031167	rRNA methylation	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
BP	GO:0033036	macromolecule localization	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
MF	GO:0034511	U3 snoRNA binding	IEP	Predicted GO
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
BP	GO:0036265	RNA (guanine-N7)-methylation	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0042886	amide transport	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0044237	cellular metabolic process	IEP	Predicted GO
BP	GO:0044238	primary metabolic process	IEP	Predicted GO
CC	GO:0044428	nuclear part	IEP	Predicted GO
BP	GO:0045184	establishment of protein localization	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0070475	rRNA base methylation	IEP	Predicted GO
BP	GO:0070476	rRNA (guanine-N7)-methylation	IEP	Predicted GO
BP	GO:0071702	organic substance transport	IEP	Predicted GO
BP	GO:0071704	organic substance metabolic process	IEP	Predicted GO
BP	GO:0071705	nitrogen compound transport	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
CC	GO:1990904	ribonucleoprotein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003690	MTERF	52	398

External Links

No external refs found!

Brara.E03356.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation