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  5. Brara.F00193.1

Brara.F00193.1


Description : nucleoporin of nuclear pore complex *(NUP50)


Gene families : OG_42_0004029 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004029_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F00193.1
Cluster HCAA Clusters: Cluster_319

Target Alias Description ECC score Gene Family Method Actions
Cre15.g641000 No alias NUP50 (Nucleoporin 50 kDa) protein 0.02 Orthogroups_2024-Update
LOC_Os05g28190 No alias ranBP1 domain containing protein, expressed 0.03 Orthogroups_2024-Update
Solyc03g120280 No alias Ran-binding protein 1 domain-containing (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA 16Dec
BP GO:0046907 intracellular transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
CC GO:0072546 ER membrane protein complex IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR015007 NUP2/50/61 13 77
IPR000156 Ran_bind_dom 257 369
No external refs found!